Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 AC096734.2-201ENST00000562054 433 ntBASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 AC080080.1-201ENST00000625121 2420 ntBASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 FAM185BP-201ENST00000443595 716 ntBASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 CXCL1P1-201ENST00000502804 216 ntBASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 PGAM5P1-201ENST00000518923 814 ntBASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM39Q9HCM9 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 REXO1L3P-201ENST00000622202 1288 ntBASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM39Q9HCM9 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms