Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 AL139288.1-201ENST00000623748 933 ntBASIC17.46■□□□□ 0.39
USP29Q9HBJ7 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
USP29Q9HBJ7 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
USP29Q9HBJ7 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.38
USP29Q9HBJ7 HLA-A-202ENST00000376806 1854 ntBASIC17.46■□□□□ 0.38
USP29Q9HBJ7 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
USP29Q9HBJ7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
USP29Q9HBJ7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
USP29Q9HBJ7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
USP29Q9HBJ7 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 NCF1C-201ENST00000438382 1427 ntBASIC17.45■□□□□ 0.38
USP29Q9HBJ7 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.45■□□□□ 0.38
USP29Q9HBJ7 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 AL391256.1-201ENST00000443260 1855 ntBASIC17.44■□□□□ 0.38
USP29Q9HBJ7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 AP002490.2-201ENST00000524791 560 ntBASIC17.44■□□□□ 0.38
USP29Q9HBJ7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.44■□□□□ 0.38
USP29Q9HBJ7 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms