Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 PI4KAP1-204ENST00000612579 1703 ntBASIC16.2■□□□□ 0.18
BRF2Q9HAW0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 ELK2BP-201ENST00000415014 1224 ntBASIC16.2■□□□□ 0.18
BRF2Q9HAW0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 AC002310.6-201ENST00000624451 1377 ntBASIC16.2■□□□□ 0.18
BRF2Q9HAW0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 AC006504.4-201ENST00000592118 1568 ntBASIC16.2■□□□□ 0.18
BRF2Q9HAW0 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 KRT18P27-201ENST00000427733 1299 ntBASIC16.19■□□□□ 0.18
BRF2Q9HAW0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 AC073648.2-201ENST00000510116 352 ntBASIC16.19■□□□□ 0.18
BRF2Q9HAW0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 REXO1L3P-201ENST00000622202 1288 ntBASIC16.19■□□□□ 0.18
BRF2Q9HAW0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 NFIC-211ENST00000641145 8399 ntBASIC16.19■□□□□ 0.18
BRF2Q9HAW0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 PCDHB19P-201ENST00000570871 2371 ntBASIC16.19■□□□□ 0.18
BRF2Q9HAW0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.19■□□□□ 0.18
BRF2Q9HAW0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 OR7E14P-202ENST00000530490 1290 ntBASIC16.18■□□□□ 0.18
BRF2Q9HAW0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 AC091167.2-201ENST00000579581 588 ntBASIC16.18■□□□□ 0.18
BRF2Q9HAW0 GGTLC5P-201ENST00000617623 998 ntBASIC16.18■□□□□ 0.18
BRF2Q9HAW0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
BRF2Q9HAW0 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms