Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 AL133338.1-201ENST00000565695 1517 ntBASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 AC098850.1-201ENST00000419919 790 ntBASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 MYCLP2-201ENST00000449268 967 ntBASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 AC099568.2-201ENST00000609194 695 ntBASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 KRT8P49-201ENST00000604166 1432 ntBASIC20.03■□□□□ 0.8
ZNF541Q9H0D2 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 AL589987.1-201ENST00000453380 819 ntBASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 CROCCP4-201ENST00000457096 498 ntBASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 FAM8A2P-201ENST00000528813 1142 ntBASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 SRD5A3P1-201ENST00000603021 949 ntBASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF541Q9H0D2 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AC023310.3-201ENST00000557027 670 ntBASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AC100756.1-201ENST00000562736 682 ntBASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AP005482.1-201ENST00000563722 1273 ntBASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AC138749.3-201ENST00000567691 622 ntBASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AC116165.1-201ENST00000611806 668 ntBASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AC133552.6-201ENST00000613406 534 ntBASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 AL109936.8-201ENST00000641772 604 ntBASIC20.02■□□□□ 0.79
ZNF541Q9H0D2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms