Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 AP001350.2-201ENST00000625104 1094 ntBASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 LINC00895-201ENST00000629028 1637 ntBASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 FAM86GP-201ENST00000448322 971 ntBASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 SLC25A39P2-201ENST00000537614 270 ntBASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.96■□□□□ 0.47
PAAF1Q9BRP4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PAAF1Q9BRP4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
PAAF1Q9BRP4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 SPDYE14P-201ENST00000442619 822 ntBASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 AC027307.2-201ENST00000591252 911 ntBASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 AC084121.4-201ENST00000641598 221 ntBASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 AF228730.8-201ENST00000642140 221 ntBASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.95■□□□□ 0.46
PAAF1Q9BRP4 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 PCDHB18P-201ENST00000524813 2368 ntBASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 SPCS2P1-201ENST00000561636 679 ntBASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 AC026150.2-201ENST00000564693 1156 ntBASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PAAF1Q9BRP4 AP000842.3-202ENST00000569238 1080 ntBASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms