Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.8■□□□□ 0.76
NUP88Q99567 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.8■□□□□ 0.76
NUP88Q99567 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.8■□□□□ 0.76
NUP88Q99567 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
NUP88Q99567 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
NUP88Q99567 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.8■□□□□ 0.76
NUP88Q99567 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.8■□□□□ 0.76
NUP88Q99567 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
NUP88Q99567 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NUP88Q99567 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 AC141586.5-201ENST00000624546 2050 ntBASIC19.79■□□□□ 0.76
NUP88Q99567 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NUP88Q99567 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
NUP88Q99567 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
NUP88Q99567 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.79■□□□□ 0.76
NUP88Q99567 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.79■□□□□ 0.76
NUP88Q99567 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.79■□□□□ 0.76
NUP88Q99567 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NUP88Q99567 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.79■□□□□ 0.76
NUP88Q99567 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
NUP88Q99567 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
NUP88Q99567 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NUP88Q99567 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
NUP88Q99567 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.79■□□□□ 0.76
NUP88Q99567 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP88Q99567 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NUP88Q99567 EGFEM1P-202ENST00000431685 1563 ntBASIC19.78■□□□□ 0.76
NUP88Q99567 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NUP88Q99567 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.78■□□□□ 0.76
NUP88Q99567 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.78■□□□□ 0.76
NUP88Q99567 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.78■□□□□ 0.76
NUP88Q99567 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.78■□□□□ 0.76
NUP88Q99567 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.78■□□□□ 0.76
NUP88Q99567 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.78■□□□□ 0.76
NUP88Q99567 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.78■□□□□ 0.76
NUP88Q99567 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.78■□□□□ 0.76
NUP88Q99567 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.78■□□□□ 0.76
NUP88Q99567 AL355385.1-201ENST00000606123 409 ntBASIC19.78■□□□□ 0.76
NUP88Q99567 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.78■□□□□ 0.76
NUP88Q99567 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 AC093525.9-201ENST00000624961 1746 ntBASIC19.78■□□□□ 0.76
NUP88Q99567 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NUP88Q99567 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NUP88Q99567 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.78■□□□□ 0.76
NUP88Q99567 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.78■□□□□ 0.76
NUP88Q99567 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NUP88Q99567 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NUP88Q99567 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.77■□□□□ 0.76
NUP88Q99567 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.77■□□□□ 0.76
NUP88Q99567 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.77■□□□□ 0.76
NUP88Q99567 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.77■□□□□ 0.76
NUP88Q99567 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.77■□□□□ 0.76
NUP88Q99567 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.77■□□□□ 0.76
NUP88Q99567 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.77■□□□□ 0.76
NUP88Q99567 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
NUP88Q99567 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.77■□□□□ 0.76
NUP88Q99567 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.77■□□□□ 0.76
NUP88Q99567 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms