Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 AL138918.1-201ENST00000568306 659 ntBASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 MIR3909-201ENST00000579518 119 ntBASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AC007613.1-201ENST00000572811 2597 ntBASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 TOP3BP1-201ENST00000420768 1380 ntBASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 TSSK5P-201ENST00000423978 907 ntBASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 RN7SL692P-201ENST00000464677 288 ntBASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AC091167.2-201ENST00000579581 588 ntBASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AC004233.3-201ENST00000607794 1269 ntBASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AC018529.1-201ENST00000613063 361 ntBASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SNRNP40Q96DI7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 AL359881.2-201ENST00000602973 570 ntBASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 AC003101.2-201ENST00000612557 442 ntBASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 AP001350.2-201ENST00000625104 1094 ntBASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SNRNP40Q96DI7 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms