Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 AC027601.4-201ENST00000611259 610 ntBASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 AP002490.2-201ENST00000524791 560 ntBASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4CQ96CF2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4CQ96CF2 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 AC009053.2-201ENST00000563701 2365 ntBASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.19■□□□□ 0.82
CHMP4CQ96CF2 AL353135.1-201ENST00000606729 504 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms