Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 AC012313.1-201ENST00000593393 3059 ntBASIC11.63□□□□□ -0.55
CSMD3Q7Z407 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CSMD3Q7Z407 CDC14C-201ENST00000428251 1719 ntBASIC11.62□□□□□ -0.55
CSMD3Q7Z407 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AL589739.1-201ENST00000607720 493 ntBASIC11.62□□□□□ -0.55
CSMD3Q7Z407 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CSMD3Q7Z407 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CD74-212ENST00000524315 584 ntTSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 MIR6869-201ENST00000619434 62 ntBASIC11.61□□□□□ -0.55
CSMD3Q7Z407 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 AC138028.4-201ENST00000564984 1845 ntBASIC11.61□□□□□ -0.55
CSMD3Q7Z407 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 HLA-DPB2-205ENST00000435074 1188 ntBASIC11.61□□□□□ -0.55
CSMD3Q7Z407 MYCLP2-201ENST00000449268 967 ntBASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 RAB35-202ENST00000534951 939 ntTSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 KRT8P44-201ENST00000441609 1350 ntBASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms