Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.33■□□□□ 0.69
ATL3Q6DD88 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATL3Q6DD88 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 BX005266.1-201ENST00000473402 457 ntBASIC19.33■□□□□ 0.68
ATL3Q6DD88 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 MIR4492-201ENST00000581627 80 ntBASIC19.33■□□□□ 0.68
ATL3Q6DD88 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 AF228730.7-201ENST00000641842 219 ntBASIC19.33■□□□□ 0.68
ATL3Q6DD88 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 AL356309.3-201ENST00000624132 1934 ntBASIC19.33■□□□□ 0.68
ATL3Q6DD88 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ATL3Q6DD88 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
ATL3Q6DD88 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.32■□□□□ 0.68
ATL3Q6DD88 SNX33P1-201ENST00000592116 1762 ntBASIC19.32■□□□□ 0.68
ATL3Q6DD88 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATL3Q6DD88 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ATL3Q6DD88 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 AL662844.4-201ENST00000606367 2838 ntBASIC19.31■□□□□ 0.68
ATL3Q6DD88 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.31■□□□□ 0.68
ATL3Q6DD88 MPDU1-223ENST00000582151 728 ntBASIC19.31■□□□□ 0.68
ATL3Q6DD88 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.31■□□□□ 0.68
ATL3Q6DD88 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 AC002310.6-201ENST00000624451 1377 ntBASIC19.31■□□□□ 0.68
ATL3Q6DD88 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATL3Q6DD88 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
ATL3Q6DD88 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 KRT8P39-201ENST00000396270 1433 ntBASIC19.3■□□□□ 0.68
ATL3Q6DD88 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATL3Q6DD88 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms