Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 NOC2LP1-202ENST00000452600 2235 ntBASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AC104989.1-201ENST00000519711 778 ntBASIC17.65■□□□□ 0.42
CHD9Q3L8U1 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 TOP3BP1-201ENST00000420768 1380 ntBASIC17.65■□□□□ 0.42
CHD9Q3L8U1 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AC099548.2-209ENST00000480264 625 ntBASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AC015936.2-201ENST00000593177 259 ntBASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AC244093.1-201ENST00000610837 814 ntBASIC17.65■□□□□ 0.42
CHD9Q3L8U1 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.65■□□□□ 0.42
CHD9Q3L8U1 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CHD9Q3L8U1 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.64■□□□□ 0.42
CHD9Q3L8U1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 RHOQP1-201ENST00000555758 579 ntBASIC17.64■□□□□ 0.41
CHD9Q3L8U1 TMEM261P1-201ENST00000604899 340 ntBASIC17.64■□□□□ 0.41
CHD9Q3L8U1 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CHD9Q3L8U1 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms