Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC11.96□□□□□ -0.49
CKS1BP61024 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CKS1BP61024 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CKS1BP61024 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CKS1BP61024 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC11.96□□□□□ -0.49
CKS1BP61024 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC11.96□□□□□ -0.5
CKS1BP61024 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC11.96□□□□□ -0.5
CKS1BP61024 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.5
CKS1BP61024 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CKS1BP61024 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 AC067750.1-201ENST00000608826 6545 ntBASIC11.95□□□□□ -0.5
CKS1BP61024 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 HIST1H2APS4-201ENST00000362070 348 ntBASIC11.95□□□□□ -0.5
CKS1BP61024 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC11.95□□□□□ -0.5
CKS1BP61024 WWOX-216ENST00000569818 525 ntBASIC11.95□□□□□ -0.5
CKS1BP61024 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 MIR4674-201ENST00000582457 87 ntBASIC11.95□□□□□ -0.5
CKS1BP61024 CR769767.2-201ENST00000622735 460 ntBASIC11.95□□□□□ -0.5
CKS1BP61024 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
CKS1BP61024 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC11.95□□□□□ -0.5
CKS1BP61024 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC11.95□□□□□ -0.5
CKS1BP61024 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
CKS1BP61024 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC11.94□□□□□ -0.5
CKS1BP61024 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC11.94□□□□□ -0.5
CKS1BP61024 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
CKS1BP61024 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
CKS1BP61024 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
CKS1BP61024 CICP20-201ENST00000443330 2801 ntBASIC11.94□□□□□ -0.5
CKS1BP61024 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CKS1BP61024 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC11.94□□□□□ -0.5
CKS1BP61024 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC11.94□□□□□ -0.5
CKS1BP61024 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
CKS1BP61024 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CKS1BP61024 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CKS1BP61024 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
CKS1BP61024 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms