Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.35■□□□□ 0.69
SMARCA1P28370 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.35■□□□□ 0.69
SMARCA1P28370 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 AC010327.4-202ENST00000591484 748 ntBASIC19.35■□□□□ 0.69
SMARCA1P28370 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 ELL2P1-201ENST00000413990 1906 ntBASIC19.35■□□□□ 0.69
SMARCA1P28370 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
SMARCA1P28370 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SMARCA1P28370 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.34■□□□□ 0.69
SMARCA1P28370 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.34■□□□□ 0.69
SMARCA1P28370 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.34■□□□□ 0.69
SMARCA1P28370 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.34■□□□□ 0.69
SMARCA1P28370 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 ALG1L5P-201ENST00000482043 771 ntBASIC19.34■□□□□ 0.69
SMARCA1P28370 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.34■□□□□ 0.69
SMARCA1P28370 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.34■□□□□ 0.69
SMARCA1P28370 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.34■□□□□ 0.69
SMARCA1P28370 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SMARCA1P28370 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 AL671710.1-201ENST00000610245 2349 ntBASIC19.34■□□□□ 0.69
SMARCA1P28370 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.34■□□□□ 0.69
SMARCA1P28370 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
SMARCA1P28370 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCA1P28370 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.33■□□□□ 0.69
SMARCA1P28370 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
SMARCA1P28370 AKAP8P1-201ENST00000434743 1349 ntBASIC19.33■□□□□ 0.69
SMARCA1P28370 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCA1P28370 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCA1P28370 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.33■□□□□ 0.69
SMARCA1P28370 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCA1P28370 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCA1P28370 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 ADH5P3-201ENST00000433842 1137 ntBASIC19.33■□□□□ 0.68
SMARCA1P28370 FAM86C2P-203ENST00000528684 1004 ntBASIC19.33■□□□□ 0.68
SMARCA1P28370 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.33■□□□□ 0.68
SMARCA1P28370 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SMARCA1P28370 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
SMARCA1P28370 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SMARCA1P28370 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SMARCA1P28370 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.33■□□□□ 0.68
SMARCA1P28370 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SMARCA1P28370 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SMARCA1P28370 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SMARCA1P28370 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.33■□□□□ 0.68
SMARCA1P28370 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SMARCA1P28370 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCA1P28370 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SMARCA1P28370 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 AL512652.2-201ENST00000625156 1716 ntBASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms