Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GNAQP1-201ENST00000444815 1067 ntBASIC14.76□□□□□ -0.05
COL8A1P27658 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
COL8A1P27658 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.76□□□□□ -0.05
COL8A1P27658 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.76□□□□□ -0.05
COL8A1P27658 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 AL009183.1-201ENST00000603760 355 ntBASIC14.76□□□□□ -0.05
COL8A1P27658 AC008738.7-201ENST00000609744 511 ntBASIC14.76□□□□□ -0.05
COL8A1P27658 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 CROCCP3-202ENST00000420820 1947 ntBASIC14.76□□□□□ -0.05
COL8A1P27658 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 AL133338.1-201ENST00000565695 1517 ntBASIC14.76□□□□□ -0.05
COL8A1P27658 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
COL8A1P27658 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
COL8A1P27658 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
COL8A1P27658 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 AP006294.1-201ENST00000415407 339 ntBASIC14.75□□□□□ -0.05
COL8A1P27658 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.75□□□□□ -0.05
COL8A1P27658 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.75□□□□□ -0.05
COL8A1P27658 MIR4538-201ENST00000581377 78 ntBASIC14.75□□□□□ -0.05
COL8A1P27658 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
COL8A1P27658 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 AC126763.1-201ENST00000552015 2118 ntBASIC14.75□□□□□ -0.05
COL8A1P27658 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.75□□□□□ -0.05
COL8A1P27658 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.75□□□□□ -0.05
COL8A1P27658 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
COL8A1P27658 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL8A1P27658 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
COL8A1P27658 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.74□□□□□ -0.05
COL8A1P27658 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.74□□□□□ -0.05
COL8A1P27658 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.74□□□□□ -0.05
COL8A1P27658 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 AC104794.3-201ENST00000566840 1248 ntBASIC14.74□□□□□ -0.05
COL8A1P27658 AC009407.1-201ENST00000568958 598 ntBASIC14.74□□□□□ -0.05
COL8A1P27658 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
COL8A1P27658 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.74□□□□□ -0.05
COL8A1P27658 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL8A1P27658 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.74□□□□□ -0.05
COL8A1P27658 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms