Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.43■□□□□ 0.22
HOXC4P09017 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 KRT18P32-201ENST00000424695 1287 ntBASIC16.43■□□□□ 0.22
HOXC4P09017 FAM58DP-201ENST00000428076 619 ntBASIC16.43■□□□□ 0.22
HOXC4P09017 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.43■□□□□ 0.22
HOXC4P09017 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 AC109322.1-201ENST00000524499 1264 ntBASIC16.43■□□□□ 0.22
HOXC4P09017 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 AC027307.2-201ENST00000591252 911 ntBASIC16.43■□□□□ 0.22
HOXC4P09017 AC073389.1-201ENST00000595595 795 ntBASIC16.43■□□□□ 0.22
HOXC4P09017 AP001059.3-201ENST00000619053 235 ntBASIC16.43■□□□□ 0.22
HOXC4P09017 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
HOXC4P09017 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.43■□□□□ 0.22
HOXC4P09017 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 SNX33P1-201ENST00000592116 1762 ntBASIC16.43■□□□□ 0.22
HOXC4P09017 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC4P09017 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC4P09017 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.42■□□□□ 0.22
HOXC4P09017 HCG11-201ENST00000411553 5696 ntBASIC16.42■□□□□ 0.22
HOXC4P09017 AC139713.2-201ENST00000641328 2723 ntBASIC16.42■□□□□ 0.22
HOXC4P09017 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 PCDHB17P-201ENST00000539533 2393 ntBASIC16.42■□□□□ 0.22
HOXC4P09017 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HOXC4P09017 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HOXC4P09017 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HOXC4P09017 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.42■□□□□ 0.22
HOXC4P09017 CYMP-203ENST00000474680 1263 ntBASIC16.42■□□□□ 0.22
HOXC4P09017 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.42■□□□□ 0.22
HOXC4P09017 AP000842.3-202ENST00000569238 1080 ntBASIC16.42■□□□□ 0.22
HOXC4P09017 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.42■□□□□ 0.22
HOXC4P09017 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HOXC4P09017 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HOXC4P09017 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXC4P09017 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HOXC4P09017 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HOXC4P09017 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HOXC4P09017 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.41■□□□□ 0.22
HOXC4P09017 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXC4P09017 GPS2P2-201ENST00000430745 888 ntBASIC16.41■□□□□ 0.22
HOXC4P09017 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.41■□□□□ 0.22
HOXC4P09017 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.41■□□□□ 0.22
HOXC4P09017 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.41■□□□□ 0.22
HOXC4P09017 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.41■□□□□ 0.22
HOXC4P09017 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXC4P09017 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXC4P09017 AL355385.1-201ENST00000606123 409 ntBASIC16.41■□□□□ 0.22
HOXC4P09017 AC093028.1-201ENST00000622998 982 ntBASIC16.41■□□□□ 0.22
HOXC4P09017 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.41■□□□□ 0.22
HOXC4P09017 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXC4P09017 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.41■□□□□ 0.22
HOXC4P09017 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXC4P09017 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HOXC4P09017 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms