Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.09■□□□□ 0.33
RETP07949 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.09■□□□□ 0.33
RETP07949 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.09■□□□□ 0.33
RETP07949 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.09■□□□□ 0.33
RETP07949 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.09■□□□□ 0.33
RETP07949 IGHV3-42-201ENST00000520410 361 ntBASIC17.09■□□□□ 0.33
RETP07949 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.09■□□□□ 0.33
RETP07949 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
RETP07949 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 AC099522.2-201ENST00000607001 744 ntBASIC17.09■□□□□ 0.33
RETP07949 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
RETP07949 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
RETP07949 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.09■□□□□ 0.33
RETP07949 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.09■□□□□ 0.33
RETP07949 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RETP07949 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.09■□□□□ 0.33
RETP07949 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.09■□□□□ 0.33
RETP07949 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.09■□□□□ 0.33
RETP07949 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RETP07949 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.08■□□□□ 0.33
RETP07949 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.08■□□□□ 0.33
RETP07949 PCDHA12-202ENST00000613593 2588 ntBASIC17.08■□□□□ 0.33
RETP07949 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RETP07949 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RETP07949 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RETP07949 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
RETP07949 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.08■□□□□ 0.33
RETP07949 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RETP07949 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.08■□□□□ 0.32
RETP07949 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.08■□□□□ 0.32
RETP07949 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
RETP07949 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.08■□□□□ 0.32
RETP07949 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.08■□□□□ 0.32
RETP07949 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.08■□□□□ 0.32
RETP07949 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.08■□□□□ 0.32
RETP07949 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.08■□□□□ 0.32
RETP07949 FAM58DP-201ENST00000428076 619 ntBASIC17.08■□□□□ 0.32
RETP07949 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.08■□□□□ 0.32
RETP07949 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.08■□□□□ 0.32
RETP07949 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.08■□□□□ 0.32
RETP07949 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.08■□□□□ 0.32
RETP07949 AL390754.1-201ENST00000619088 582 ntBASIC17.08■□□□□ 0.32
RETP07949 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RETP07949 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RETP07949 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RETP07949 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RETP07949 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RETP07949 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.07■□□□□ 0.32
RETP07949 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.07■□□□□ 0.32
RETP07949 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 AC080080.1-201ENST00000625121 2420 ntBASIC17.07■□□□□ 0.32
RETP07949 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.07■□□□□ 0.32
RETP07949 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RETP07949 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.07■□□□□ 0.32
RETP07949 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.07■□□□□ 0.32
RETP07949 TREML5P-201ENST00000421694 576 ntBASIC17.07■□□□□ 0.32
RETP07949 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.07■□□□□ 0.32
RETP07949 RBPMS2P1-201ENST00000437762 623 ntBASIC17.07■□□□□ 0.32
RETP07949 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.07■□□□□ 0.32
RETP07949 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.07■□□□□ 0.32
RETP07949 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.07■□□□□ 0.32
RETP07949 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.07■□□□□ 0.32
RETP07949 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
RETP07949 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
RETP07949 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.07■□□□□ 0.32
RETP07949 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RETP07949 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms