Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AL627223.1-201ENST00000416693 442 ntBASIC16.49■□□□□ 0.23
TNFP01375 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.49■□□□□ 0.23
TNFP01375 IGHV3-62-201ENST00000520057 340 ntBASIC16.49■□□□□ 0.23
TNFP01375 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 MIR3909-201ENST00000579518 119 ntBASIC16.49■□□□□ 0.23
TNFP01375 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
TNFP01375 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.49■□□□□ 0.23
TNFP01375 AC093028.1-201ENST00000622998 982 ntBASIC16.49■□□□□ 0.23
TNFP01375 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.49■□□□□ 0.23
TNFP01375 LINC00628-201ENST00000628516 1289 ntBASIC16.49■□□□□ 0.23
TNFP01375 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.49■□□□□ 0.23
TNFP01375 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TNFP01375 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TNFP01375 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TNFP01375 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 TUBB8P12-201ENST00000308911 1335 ntBASIC16.48■□□□□ 0.23
TNFP01375 TUBB7P-202ENST00000428444 1305 ntBASIC16.48■□□□□ 0.23
TNFP01375 TUBB8P7-204ENST00000567960 1332 ntBASIC16.48■□□□□ 0.23
TNFP01375 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 AL133373.2-201ENST00000623187 2828 ntBASIC16.48■□□□□ 0.23
TNFP01375 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TNFP01375 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TNFP01375 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
TNFP01375 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 WASH6P-202ENST00000359512 1437 ntBASIC16.48■□□□□ 0.23
TNFP01375 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.48■□□□□ 0.23
TNFP01375 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 HMGN1P19-201ENST00000436976 333 ntBASIC16.48■□□□□ 0.23
TNFP01375 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.48■□□□□ 0.23
TNFP01375 CYMP-203ENST00000474680 1263 ntBASIC16.48■□□□□ 0.23
TNFP01375 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.48■□□□□ 0.23
TNFP01375 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.48■□□□□ 0.23
TNFP01375 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.48■□□□□ 0.23
TNFP01375 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 CYP2A7P1-201ENST00000595391 815 ntBASIC16.48■□□□□ 0.23
TNFP01375 AC106028.4-201ENST00000614509 607 ntBASIC16.48■□□□□ 0.23
TNFP01375 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
TNFP01375 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.48■□□□□ 0.23
TNFP01375 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.48■□□□□ 0.23
TNFP01375 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.48■□□□□ 0.23
TNFP01375 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.48■□□□□ 0.23
TNFP01375 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TNFP01375 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.48■□□□□ 0.23
TNFP01375 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
TNFP01375 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.47■□□□□ 0.23
TNFP01375 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TNFP01375 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TNFP01375 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TNFP01375 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TNFP01375 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TNFP01375 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms