Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
LMX1BO60663 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.94□□□□□ -0.02
LMX1BO60663 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1BO60663 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LMX1BO60663 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 FRMD8P1-201ENST00000440433 1524 ntBASIC14.94□□□□□ -0.02
LMX1BO60663 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1BO60663 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.94□□□□□ -0.02
LMX1BO60663 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14.94□□□□□ -0.02
LMX1BO60663 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LMX1BO60663 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.94□□□□□ -0.02
LMX1BO60663 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1BO60663 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1BO60663 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1BO60663 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
LMX1BO60663 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.94□□□□□ -0.02
LMX1BO60663 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC14.93□□□□□ -0.02
LMX1BO60663 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.93□□□□□ -0.02
LMX1BO60663 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
LMX1BO60663 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LMX1BO60663 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 RCN1P2-201ENST00000398357 915 ntBASIC14.93□□□□□ -0.02
LMX1BO60663 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.93□□□□□ -0.02
LMX1BO60663 RBM17P3-201ENST00000417687 1192 ntBASIC14.93□□□□□ -0.02
LMX1BO60663 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1BO60663 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC14.93□□□□□ -0.02
LMX1BO60663 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LMX1BO60663 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.93□□□□□ -0.02
LMX1BO60663 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1BO60663 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.93□□□□□ -0.02
LMX1BO60663 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1BO60663 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1BO60663 MTDHP3-201ENST00000594186 672 ntBASIC14.93□□□□□ -0.02
LMX1BO60663 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.93□□□□□ -0.02
LMX1BO60663 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LMX1BO60663 PCDHB17P-201ENST00000539533 2393 ntBASIC14.93□□□□□ -0.02
LMX1BO60663 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1BO60663 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 LINC02199-201ENST00000506655 2702 ntBASIC14.93□□□□□ -0.02
LMX1BO60663 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1BO60663 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1BO60663 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
LMX1BO60663 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 CCS-201ENST00000310190 942 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1BO60663 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.92□□□□□ -0.02
LMX1BO60663 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.92□□□□□ -0.02
LMX1BO60663 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.92□□□□□ -0.02
LMX1BO60663 KLF4P1-201ENST00000412782 1185 ntBASIC14.92□□□□□ -0.02
LMX1BO60663 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 NKTR-203ENST00000442970 646 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 AC092183.1-201ENST00000469884 875 ntBASIC14.92□□□□□ -0.02
LMX1BO60663 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1BO60663 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.92□□□□□ -0.02
LMX1BO60663 FAM215A-202ENST00000632077 792 ntBASIC14.92□□□□□ -0.02
LMX1BO60663 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 PAN3-AS1-201ENST00000563843 1351 ntBASIC14.92□□□□□ -0.02
LMX1BO60663 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms