Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 RNF216P1-203ENST00000404404 2427 ntBASIC15.76■□□□□ 0.11
PRKNO60260 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 PCDHB17P-201ENST00000539533 2393 ntBASIC15.76■□□□□ 0.11
PRKNO60260 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.76■□□□□ 0.11
PRKNO60260 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.76■□□□□ 0.11
PRKNO60260 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
PRKNO60260 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.76■□□□□ 0.11
PRKNO60260 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PRKNO60260 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PRKNO60260 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.76■□□□□ 0.11
PRKNO60260 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.76■□□□□ 0.11
PRKNO60260 RHOQP3-201ENST00000437982 621 ntBASIC15.76■□□□□ 0.11
PRKNO60260 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.76■□□□□ 0.11
PRKNO60260 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.76■□□□□ 0.11
PRKNO60260 AC092865.5-201ENST00000545435 363 ntBASIC15.76■□□□□ 0.11
PRKNO60260 DUX4L17-201ENST00000557360 1267 ntBASIC15.76■□□□□ 0.11
PRKNO60260 AC096734.2-201ENST00000562054 433 ntBASIC15.76■□□□□ 0.11
PRKNO60260 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.76■□□□□ 0.11
PRKNO60260 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.76■□□□□ 0.11
PRKNO60260 REXO1L3P-201ENST00000622202 1288 ntBASIC15.76■□□□□ 0.11
PRKNO60260 AC004877.2-201ENST00000623941 599 ntBASIC15.76■□□□□ 0.11
PRKNO60260 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.76■□□□□ 0.11
PRKNO60260 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.76■□□□□ 0.11
PRKNO60260 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.76■□□□□ 0.11
PRKNO60260 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.76■□□□□ 0.11
PRKNO60260 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.76■□□□□ 0.11
PRKNO60260 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PRKNO60260 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.76■□□□□ 0.11
PRKNO60260 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PRKNO60260 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.75■□□□□ 0.11
PRKNO60260 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 BX842568.4-201ENST00000421222 227 ntBASIC15.75■□□□□ 0.11
PRKNO60260 FAM185BP-201ENST00000443595 716 ntBASIC15.75■□□□□ 0.11
PRKNO60260 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
PRKNO60260 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.75■□□□□ 0.11
PRKNO60260 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PRKNO60260 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.75■□□□□ 0.11
PRKNO60260 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.75■□□□□ 0.11
PRKNO60260 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.75■□□□□ 0.11
PRKNO60260 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PRKNO60260 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PRKNO60260 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PRKNO60260 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.75■□□□□ 0.11
PRKNO60260 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PRKNO60260 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.74■□□□□ 0.11
PRKNO60260 BCAR1-209ENST00000546196 1340 ntBASIC15.74■□□□□ 0.11
PRKNO60260 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PRKNO60260 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.74■□□□□ 0.11
PRKNO60260 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PRKNO60260 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 YBX2P1-201ENST00000394192 760 ntBASIC15.74■□□□□ 0.11
PRKNO60260 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.74■□□□□ 0.11
PRKNO60260 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.74■□□□□ 0.11
PRKNO60260 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PRKNO60260 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.74■□□□□ 0.11
PRKNO60260 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms