Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTP4A1Q93096 AL139125.2-201ENST00000623134 1869 ntBASIC21.56■■□□□ 1.04
PTP4A1Q93096 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTP4A1Q93096 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTP4A1Q93096 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.56■■□□□ 1.04
PTP4A1Q93096 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.56■■□□□ 1.04
PTP4A1Q93096 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTP4A1Q93096 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTP4A1Q93096 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PTP4A1Q93096 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PTP4A1Q93096 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTP4A1Q93096 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.55■■□□□ 1.04
PTP4A1Q93096 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PTP4A1Q93096 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.55■■□□□ 1.04
PTP4A1Q93096 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTP4A1Q93096 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTP4A1Q93096 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.54■■□□□ 1.04
PTP4A1Q93096 MIR639-201ENST00000384974 98 ntBASIC21.54■■□□□ 1.04
PTP4A1Q93096 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTP4A1Q93096 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTP4A1Q93096 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTP4A1Q93096 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTP4A1Q93096 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.53■■□□□ 1.04
PTP4A1Q93096 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTP4A1Q93096 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.53■■□□□ 1.04
PTP4A1Q93096 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.52■■□□□ 1.04
PTP4A1Q93096 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTP4A1Q93096 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTP4A1Q93096 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.52■■□□□ 1.04
PTP4A1Q93096 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTP4A1Q93096 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTP4A1Q93096 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTP4A1Q93096 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTP4A1Q93096 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
PTP4A1Q93096 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTP4A1Q93096 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTP4A1Q93096 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTP4A1Q93096 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTP4A1Q93096 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.51■■□□□ 1.03
PTP4A1Q93096 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTP4A1Q93096 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTP4A1Q93096 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTP4A1Q93096 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
PTP4A1Q93096 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PTP4A1Q93096 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTP4A1Q93096 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.49■■□□□ 1.03
PTP4A1Q93096 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.49■■□□□ 1.03
PTP4A1Q93096 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTP4A1Q93096 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.49■■□□□ 1.03
PTP4A1Q93096 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.48■■□□□ 1.03
PTP4A1Q93096 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.48■■□□□ 1.03
PTP4A1Q93096 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTP4A1Q93096 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTP4A1Q93096 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.47■■□□□ 1.03
PTP4A1Q93096 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTP4A1Q93096 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTP4A1Q93096 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTP4A1Q93096 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTP4A1Q93096 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.47■■□□□ 1.03
PTP4A1Q93096 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTP4A1Q93096 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.47■■□□□ 1.03
PTP4A1Q93096 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTP4A1Q93096 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTP4A1Q93096 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
PTP4A1Q93096 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PTP4A1Q93096 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTP4A1Q93096 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.46■■□□□ 1.03
PTP4A1Q93096 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
PTP4A1Q93096 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.46■■□□□ 1.03
PTP4A1Q93096 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTP4A1Q93096 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.46■■□□□ 1.03
PTP4A1Q93096 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTP4A1Q93096 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
PTP4A1Q93096 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTP4A1Q93096 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTP4A1Q93096 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTP4A1Q93096 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTP4A1Q93096 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PTP4A1Q93096 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTP4A1Q93096 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTP4A1Q93096 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTP4A1Q93096 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
PTP4A1Q93096 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTP4A1Q93096 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PTP4A1Q93096 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTP4A1Q93096 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTP4A1Q93096 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTP4A1Q93096 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.43■■□□□ 1.02
PTP4A1Q93096 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.43■■□□□ 1.02
PTP4A1Q93096 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTP4A1Q93096 AC097639.1-201ENST00000565519 1891 ntBASIC21.43■■□□□ 1.02
PTP4A1Q93096 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTP4A1Q93096 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms