Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 AC138932.3-201ENST00000567634 1902 ntBASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
DEPDC4Q8N2C3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.08■■□□□ 1.13
DEPDC4Q8N2C3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
DEPDC4Q8N2C3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
DEPDC4Q8N2C3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
DEPDC4Q8N2C3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.05■■□□□ 1.12
DEPDC4Q8N2C3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.05■■□□□ 1.12
DEPDC4Q8N2C3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 HSD17B1P1-201ENST00000590052 955 ntBASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
DEPDC4Q8N2C3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.02■■□□□ 1.11
DEPDC4Q8N2C3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
DEPDC4Q8N2C3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22■■□□□ 1.11
DEPDC4Q8N2C3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms