Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 AC138932.3-201ENST00000567634 1902 ntBASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
DEPDC4Q8N2C3 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.12■■□□□ 1.13
DEPDC4Q8N2C3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DEPDC4Q8N2C3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DEPDC4Q8N2C3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
DEPDC4Q8N2C3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
DEPDC4Q8N2C3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.08■■□□□ 1.13
DEPDC4Q8N2C3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
DEPDC4Q8N2C3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
DEPDC4Q8N2C3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
DEPDC4Q8N2C3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
DEPDC4Q8N2C3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.06■■□□□ 1.12
DEPDC4Q8N2C3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.05■■□□□ 1.12
DEPDC4Q8N2C3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.05■■□□□ 1.12
DEPDC4Q8N2C3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DEPDC4Q8N2C3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 HSD17B1P1-201ENST00000590052 955 ntBASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
DEPDC4Q8N2C3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
DEPDC4Q8N2C3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
DEPDC4Q8N2C3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.02■■□□□ 1.11
DEPDC4Q8N2C3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
DEPDC4Q8N2C3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DEPDC4Q8N2C3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22■■□□□ 1.11
DEPDC4Q8N2C3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms