Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLRN1P58418 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLRN1P58418 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.4■■□□□ 1.02
CLRN1P58418 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.4■■□□□ 1.02
CLRN1P58418 AC007029.1-201ENST00000604183 313 ntBASIC21.4■■□□□ 1.02
CLRN1P58418 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.4■■□□□ 1.02
CLRN1P58418 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLRN1P58418 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLRN1P58418 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLRN1P58418 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLRN1P58418 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.39■■□□□ 1.01
CLRN1P58418 AC093536.1-201ENST00000569153 554 ntBASIC21.39■■□□□ 1.01
CLRN1P58418 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.39■■□□□ 1.01
CLRN1P58418 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
CLRN1P58418 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLRN1P58418 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.38■■□□□ 1.01
CLRN1P58418 AC096887.2-201ENST00000623443 1957 ntBASIC21.38■■□□□ 1.01
CLRN1P58418 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
CLRN1P58418 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.38■■□□□ 1.01
CLRN1P58418 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
CLRN1P58418 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
CLRN1P58418 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.38■■□□□ 1.01
CLRN1P58418 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLRN1P58418 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CLRN1P58418 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLRN1P58418 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.37■■□□□ 1.01
CLRN1P58418 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLRN1P58418 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLRN1P58418 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLRN1P58418 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLRN1P58418 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLRN1P58418 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.37■■□□□ 1.01
CLRN1P58418 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLRN1P58418 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.36■■□□□ 1.01
CLRN1P58418 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLRN1P58418 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.36■■□□□ 1.01
CLRN1P58418 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLRN1P58418 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.35■■□□□ 1.01
CLRN1P58418 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN1P58418 RNF126P1-201ENST00000567452 1320 ntBASIC21.35■■□□□ 1.01
CLRN1P58418 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CLRN1P58418 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN1P58418 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN1P58418 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN1P58418 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN1P58418 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN1P58418 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.35■■□□□ 1.01
CLRN1P58418 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN1P58418 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
CLRN1P58418 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLRN1P58418 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLRN1P58418 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CLRN1P58418 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CLRN1P58418 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLRN1P58418 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CLRN1P58418 AC020928.2-201ENST00000588717 2197 ntBASIC21.34■■□□□ 1.01
CLRN1P58418 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CLRN1P58418 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLRN1P58418 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.33■■□□□ 1.01
CLRN1P58418 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLRN1P58418 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLRN1P58418 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CLRN1P58418 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLRN1P58418 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLRN1P58418 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
CLRN1P58418 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.32■■□□□ 1
CLRN1P58418 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.32■■□□□ 1
CLRN1P58418 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CLRN1P58418 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLRN1P58418 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CLRN1P58418 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CLRN1P58418 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CLRN1P58418 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CLRN1P58418 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLRN1P58418 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CLRN1P58418 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CLRN1P58418 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CLRN1P58418 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLRN1P58418 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLRN1P58418 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CLRN1P58418 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLRN1P58418 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.3■■□□□ 1
CLRN1P58418 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
CLRN1P58418 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
CLRN1P58418 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLRN1P58418 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLRN1P58418 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CLRN1P58418 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CLRN1P58418 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLRN1P58418 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLRN1P58418 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLRN1P58418 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms