Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC35.07■■■■□ 3.21
CLTCL1P53675 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC35.07■■■■□ 3.2
CLTCL1P53675 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC35.07■■■■□ 3.2
CLTCL1P53675 AL592295.1-201ENST00000400984 884 ntBASIC35.06■■■■□ 3.2
CLTCL1P53675 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC35.06■■■■□ 3.2
CLTCL1P53675 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
CLTCL1P53675 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC35.06■■■■□ 3.2
CLTCL1P53675 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC35.06■■■■□ 3.2
CLTCL1P53675 THA1P-201ENST00000590384 1145 ntBASIC35.06■■■■□ 3.2
CLTCL1P53675 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC35.05■■■■□ 3.2
CLTCL1P53675 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC35.05■■■■□ 3.2
CLTCL1P53675 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC35.05■■■■□ 3.2
CLTCL1P53675 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
CLTCL1P53675 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC35.04■■■■□ 3.2
CLTCL1P53675 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC35.04■■■■□ 3.2
CLTCL1P53675 AL356441.2-201ENST00000443009 864 ntBASIC35.04■■■■□ 3.2
CLTCL1P53675 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC35.04■■■■□ 3.2
CLTCL1P53675 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
CLTCL1P53675 Z92544.1-202ENST00000571933 1220 ntBASIC35.03■■■■□ 3.2
CLTCL1P53675 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC35.03■■■■□ 3.2
CLTCL1P53675 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC35.03■■■■□ 3.2
CLTCL1P53675 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CLTCL1P53675 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CLTCL1P53675 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
CLTCL1P53675 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
CLTCL1P53675 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC35.01■■■■□ 3.19
CLTCL1P53675 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC35.01■■■■□ 3.19
CLTCL1P53675 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
CLTCL1P53675 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC35.01■■■■□ 3.19
CLTCL1P53675 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CLTCL1P53675 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CLTCL1P53675 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CLTCL1P53675 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CLTCL1P53675 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
CLTCL1P53675 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC34.99■■■■□ 3.19
CLTCL1P53675 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CLTCL1P53675 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CLTCL1P53675 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC34.98■■■■□ 3.19
CLTCL1P53675 CREM-229ENST00000474362 1030 ntTSL 2 BASIC34.98■■■■□ 3.19
CLTCL1P53675 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC34.98■■■■□ 3.19
CLTCL1P53675 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CLTCL1P53675 AP004609.3-201ENST00000610705 1884 ntBASIC34.97■■■■□ 3.19
CLTCL1P53675 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC34.97■■■■□ 3.19
CLTCL1P53675 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC34.96■■■■□ 3.19
CLTCL1P53675 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
CLTCL1P53675 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC34.96■■■■□ 3.19
CLTCL1P53675 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC34.96■■■■□ 3.19
CLTCL1P53675 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC34.96■■■■□ 3.19
CLTCL1P53675 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC34.96■■■■□ 3.19
CLTCL1P53675 AC239859.2-201ENST00000444165 318 ntBASIC34.95■■■■□ 3.19
CLTCL1P53675 AC022616.5-201ENST00000518796 181 ntBASIC34.95■■■■□ 3.19
CLTCL1P53675 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC34.95■■■■□ 3.19
CLTCL1P53675 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC34.95■■■■□ 3.19
CLTCL1P53675 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC34.95■■■■□ 3.18
CLTCL1P53675 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC34.95■■■■□ 3.18
CLTCL1P53675 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC34.94■■■■□ 3.18
CLTCL1P53675 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC34.94■■■■□ 3.18
CLTCL1P53675 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CLTCL1P53675 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CLTCL1P53675 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC34.94■■■■□ 3.18
CLTCL1P53675 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC34.93■■■■□ 3.18
CLTCL1P53675 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC34.93■■■■□ 3.18
CLTCL1P53675 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC34.93■■■■□ 3.18
CLTCL1P53675 KRT18P10-201ENST00000388836 1287 ntBASIC34.92■■■■□ 3.18
CLTCL1P53675 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC34.92■■■■□ 3.18
CLTCL1P53675 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
CLTCL1P53675 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
CLTCL1P53675 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC34.92■■■■□ 3.18
CLTCL1P53675 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC34.92■■■■□ 3.18
CLTCL1P53675 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
CLTCL1P53675 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
CLTCL1P53675 AC142086.6-201ENST00000621154 1765 ntBASIC34.91■■■■□ 3.18
CLTCL1P53675 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CLTCL1P53675 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
CLTCL1P53675 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC34.91■■■■□ 3.18
CLTCL1P53675 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC34.91■■■■□ 3.18
CLTCL1P53675 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC34.91■■■■□ 3.18
CLTCL1P53675 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC34.9■■■■□ 3.18
CLTCL1P53675 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC34.9■■■■□ 3.18
CLTCL1P53675 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC34.9■■■■□ 3.18
CLTCL1P53675 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC34.88■■■■□ 3.17
CLTCL1P53675 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC34.88■■■■□ 3.17
CLTCL1P53675 SHF-208ENST00000560734 1731 ntTSL 3 BASIC34.88■■■■□ 3.17
CLTCL1P53675 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
CLTCL1P53675 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC34.88■■■■□ 3.17
CLTCL1P53675 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC34.87■■■■□ 3.17
CLTCL1P53675 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC34.87■■■■□ 3.17
CLTCL1P53675 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC34.87■■■■□ 3.17
CLTCL1P53675 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC34.86■■■■□ 3.17
CLTCL1P53675 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC34.86■■■■□ 3.17
CLTCL1P53675 UNC93B8-201ENST00000511903 705 ntBASIC34.86■■■■□ 3.17
CLTCL1P53675 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC34.86■■■■□ 3.17
CLTCL1P53675 BX664725.1-201ENST00000438252 379 ntBASIC34.85■■■■□ 3.17
CLTCL1P53675 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC34.85■■■■□ 3.17
CLTCL1P53675 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC34.85■■■■□ 3.17
CLTCL1P53675 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
CLTCL1P53675 GRAMD4P7-201ENST00000578182 1232 ntBASIC34.85■■■■□ 3.17
CLTCL1P53675 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
CLTCL1P53675 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
CLTCL1P53675 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms