Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC27.29■■□□□ 1.96
CIITAP33076 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CIITAP33076 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
CIITAP33076 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CIITAP33076 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CIITAP33076 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CIITAP33076 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC27.28■■□□□ 1.96
CIITAP33076 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC27.28■■□□□ 1.96
CIITAP33076 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CIITAP33076 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC27.27■■□□□ 1.96
CIITAP33076 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 KRT18P10-201ENST00000388836 1287 ntBASIC27.27■■□□□ 1.96
CIITAP33076 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CIITAP33076 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CIITAP33076 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CIITAP33076 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.95
CIITAP33076 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CIITAP33076 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC27.26■■□□□ 1.95
CIITAP33076 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CIITAP33076 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.26■■□□□ 1.95
CIITAP33076 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.26■■□□□ 1.95
CIITAP33076 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.26■■□□□ 1.95
CIITAP33076 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC27.25■■□□□ 1.95
CIITAP33076 AC092803.2-201ENST00000564287 1899 ntBASIC27.25■■□□□ 1.95
CIITAP33076 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
CIITAP33076 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CIITAP33076 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.25■■□□□ 1.95
CIITAP33076 AC087393.1-201ENST00000582896 145 ntBASIC27.25■■□□□ 1.95
CIITAP33076 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC27.25■■□□□ 1.95
CIITAP33076 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.24■■□□□ 1.95
CIITAP33076 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
CIITAP33076 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.24■■□□□ 1.95
CIITAP33076 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CIITAP33076 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
CIITAP33076 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CIITAP33076 RPS2P7-201ENST00000447334 885 ntBASIC27.24■■□□□ 1.95
CIITAP33076 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CIITAP33076 ERN1-208ENST00000606895 2068 ntBASIC27.24■■□□□ 1.95
CIITAP33076 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.24■■□□□ 1.95
CIITAP33076 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CIITAP33076 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.23■■□□□ 1.95
CIITAP33076 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CIITAP33076 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CIITAP33076 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
CIITAP33076 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC27.22■■□□□ 1.95
CIITAP33076 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC27.22■■□□□ 1.95
CIITAP33076 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CIITAP33076 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CIITAP33076 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.21■■□□□ 1.95
CIITAP33076 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC27.21■■□□□ 1.95
CIITAP33076 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
CIITAP33076 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CIITAP33076 AC010501.1-201ENST00000606270 1962 ntBASIC27.2■■□□□ 1.95
CIITAP33076 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CIITAP33076 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.95
CIITAP33076 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CIITAP33076 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
CIITAP33076 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.2■■□□□ 1.94
CIITAP33076 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
CIITAP33076 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CIITAP33076 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CIITAP33076 AC074183.2-201ENST00000623112 922 ntBASIC27.19■■□□□ 1.94
CIITAP33076 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.19■■□□□ 1.94
CIITAP33076 AC096887.2-201ENST00000623443 1957 ntBASIC27.18■■□□□ 1.94
CIITAP33076 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CIITAP33076 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC27.18■■□□□ 1.94
CIITAP33076 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.18■■□□□ 1.94
CIITAP33076 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC27.18■■□□□ 1.94
CIITAP33076 AC091060.1-201ENST00000623524 1766 ntBASIC27.17■■□□□ 1.94
CIITAP33076 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC27.17■■□□□ 1.94
CIITAP33076 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC27.17■■□□□ 1.94
CIITAP33076 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.17■■□□□ 1.94
CIITAP33076 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
CIITAP33076 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.16■■□□□ 1.94
CIITAP33076 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CIITAP33076 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CIITAP33076 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CIITAP33076 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC27.16■■□□□ 1.94
CIITAP33076 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.15■■□□□ 1.94
CIITAP33076 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.15■■□□□ 1.94
CIITAP33076 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.15■■□□□ 1.94
CIITAP33076 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CIITAP33076 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CIITAP33076 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CIITAP33076 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
CIITAP33076 DUSP8P4-201ENST00000399538 1761 ntBASIC27.14■■□□□ 1.94
CIITAP33076 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CIITAP33076 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
CIITAP33076 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CIITAP33076 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.14■■□□□ 1.94
CIITAP33076 AC139795.1-202ENST00000500444 432 ntBASIC27.14■■□□□ 1.94
CIITAP33076 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CIITAP33076 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
CIITAP33076 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms