Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC29.55■■■□□ 2.32
COL4A5P29400 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
COL4A5P29400 AL139246.5-201ENST00000606645 996 ntBASIC29.54■■■□□ 2.32
COL4A5P29400 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC29.54■■■□□ 2.32
COL4A5P29400 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC29.53■■■□□ 2.32
COL4A5P29400 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC29.53■■■□□ 2.32
COL4A5P29400 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC29.53■■■□□ 2.32
COL4A5P29400 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL4A5P29400 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL4A5P29400 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
COL4A5P29400 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL4A5P29400 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL4A5P29400 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
COL4A5P29400 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC29.52■■■□□ 2.32
COL4A5P29400 AC120024.1-201ENST00000562672 995 ntBASIC29.52■■■□□ 2.32
COL4A5P29400 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC29.52■■■□□ 2.32
COL4A5P29400 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL4A5P29400 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC29.52■■■□□ 2.32
COL4A5P29400 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC29.51■■■□□ 2.31
COL4A5P29400 AC110285.6-201ENST00000617652 491 ntBASIC29.51■■■□□ 2.31
COL4A5P29400 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL4A5P29400 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
COL4A5P29400 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
COL4A5P29400 NALT1-201ENST00000429224 738 ntTSL 5 BASIC29.5■■■□□ 2.31
COL4A5P29400 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL4A5P29400 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC29.5■■■□□ 2.31
COL4A5P29400 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
COL4A5P29400 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC29.5■■■□□ 2.31
COL4A5P29400 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
COL4A5P29400 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
COL4A5P29400 AL449106.1-201ENST00000608517 1980 ntBASIC29.49■■■□□ 2.31
COL4A5P29400 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
COL4A5P29400 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC29.49■■■□□ 2.31
COL4A5P29400 PROC-203ENST00000409048 1586 ntTSL 5 BASIC29.49■■■□□ 2.31
COL4A5P29400 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
COL4A5P29400 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC29.48■■■□□ 2.31
COL4A5P29400 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC29.48■■■□□ 2.31
COL4A5P29400 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC29.47■■■□□ 2.31
COL4A5P29400 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.47■■■□□ 2.31
COL4A5P29400 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC29.47■■■□□ 2.31
COL4A5P29400 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC29.47■■■□□ 2.31
COL4A5P29400 AL117332.1-201ENST00000622628 974 ntBASIC29.47■■■□□ 2.31
COL4A5P29400 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
COL4A5P29400 MIR4281-201ENST00000580852 62 ntBASIC29.46■■■□□ 2.31
COL4A5P29400 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.45■■■□□ 2.31
COL4A5P29400 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC29.45■■■□□ 2.31
COL4A5P29400 RPP21-222ENST00000433076 577 ntTSL 2 BASIC29.45■■■□□ 2.31
COL4A5P29400 AC092028.1-203ENST00000608262 953 ntBASIC29.45■■■□□ 2.31
COL4A5P29400 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC29.45■■■□□ 2.31
COL4A5P29400 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC29.45■■■□□ 2.3
COL4A5P29400 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.3
COL4A5P29400 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC29.44■■■□□ 2.3
COL4A5P29400 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC29.44■■■□□ 2.3
COL4A5P29400 SRR-208ENST00000576848 588 ntTSL 4 BASIC29.44■■■□□ 2.3
COL4A5P29400 ABCB10P1-201ENST00000614297 2181 ntBASIC29.44■■■□□ 2.3
COL4A5P29400 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC29.44■■■□□ 2.3
COL4A5P29400 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC29.44■■■□□ 2.3
COL4A5P29400 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL4A5P29400 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL4A5P29400 AL136116.3-201ENST00000402907 1138 ntBASIC29.43■■■□□ 2.3
COL4A5P29400 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC29.43■■■□□ 2.3
COL4A5P29400 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
COL4A5P29400 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
COL4A5P29400 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC29.42■■■□□ 2.3
COL4A5P29400 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
COL4A5P29400 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL4A5P29400 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
COL4A5P29400 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC29.41■■■□□ 2.3
COL4A5P29400 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A5P29400 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A5P29400 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC29.41■■■□□ 2.3
COL4A5P29400 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A5P29400 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL4A5P29400 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL4A5P29400 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC29.4■■■□□ 2.3
COL4A5P29400 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
COL4A5P29400 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
COL4A5P29400 SENP5-202ENST00000419026 973 ntTSL 3 BASIC29.39■■■□□ 2.3
COL4A5P29400 MIR4466-201ENST00000606121 54 ntBASIC29.39■■■□□ 2.3
COL4A5P29400 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.38■■■□□ 2.29
COL4A5P29400 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
COL4A5P29400 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL4A5P29400 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL4A5P29400 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL4A5P29400 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC29.37■■■□□ 2.29
COL4A5P29400 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL4A5P29400 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC29.36■■■□□ 2.29
COL4A5P29400 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL4A5P29400 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC29.36■■■□□ 2.29
COL4A5P29400 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
COL4A5P29400 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC29.36■■■□□ 2.29
COL4A5P29400 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC29.35■■■□□ 2.29
COL4A5P29400 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.35■■■□□ 2.29
COL4A5P29400 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC29.35■■■□□ 2.29
COL4A5P29400 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC29.35■■■□□ 2.29
COL4A5P29400 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC29.34■■■□□ 2.29
COL4A5P29400 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
COL4A5P29400 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC29.34■■■□□ 2.29
COL4A5P29400 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL4A5P29400 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC29.34■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms