Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
HMGB1P09429 AC020928.2-201ENST00000588717 2197 ntBASIC28.45■■■□□ 2.14
HMGB1P09429 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
HMGB1P09429 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
HMGB1P09429 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
HMGB1P09429 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.44■■■□□ 2.14
HMGB1P09429 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
HMGB1P09429 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
HMGB1P09429 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
HMGB1P09429 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.44■■■□□ 2.14
HMGB1P09429 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
HMGB1P09429 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC28.43■■■□□ 2.14
HMGB1P09429 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
HMGB1P09429 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.14
HMGB1P09429 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC28.43■■■□□ 2.14
HMGB1P09429 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
HMGB1P09429 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
HMGB1P09429 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
HMGB1P09429 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
HMGB1P09429 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
HMGB1P09429 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
HMGB1P09429 RAP2CP1-202ENST00000605179 643 ntBASIC28.41■■■□□ 2.14
HMGB1P09429 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
HMGB1P09429 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
HMGB1P09429 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
HMGB1P09429 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
HMGB1P09429 AC026202.3-201ENST00000600805 1127 ntBASIC28.4■■■□□ 2.14
HMGB1P09429 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
HMGB1P09429 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
HMGB1P09429 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
HMGB1P09429 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
HMGB1P09429 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
HMGB1P09429 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC28.38■■■□□ 2.13
HMGB1P09429 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
HMGB1P09429 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
HMGB1P09429 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
HMGB1P09429 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
HMGB1P09429 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
HMGB1P09429 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
HMGB1P09429 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28.37■■■□□ 2.13
HMGB1P09429 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
HMGB1P09429 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
HMGB1P09429 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC28.36■■■□□ 2.13
HMGB1P09429 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
HMGB1P09429 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
HMGB1P09429 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
HMGB1P09429 AC097639.1-201ENST00000565519 1891 ntBASIC28.36■■■□□ 2.13
HMGB1P09429 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC28.36■■■□□ 2.13
HMGB1P09429 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
HMGB1P09429 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
HMGB1P09429 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
HMGB1P09429 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.35■■■□□ 2.13
HMGB1P09429 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
HMGB1P09429 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
HMGB1P09429 HSD17B1P1-201ENST00000590052 955 ntBASIC28.34■■■□□ 2.13
HMGB1P09429 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.34■■■□□ 2.13
HMGB1P09429 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
HMGB1P09429 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
HMGB1P09429 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
HMGB1P09429 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.33■■■□□ 2.13
HMGB1P09429 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
HMGB1P09429 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
HMGB1P09429 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
HMGB1P09429 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.32■■■□□ 2.12
HMGB1P09429 CEBPA-AS1-201ENST00000592982 2198 ntBASIC28.31■■■□□ 2.12
HMGB1P09429 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
HMGB1P09429 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
HMGB1P09429 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
HMGB1P09429 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
HMGB1P09429 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC28.29■■■□□ 2.12
HMGB1P09429 AC009831.1-201ENST00000580420 1582 ntBASIC28.29■■■□□ 2.12
HMGB1P09429 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
HMGB1P09429 RARRES2P2-201ENST00000394842 485 ntBASIC28.29■■■□□ 2.12
HMGB1P09429 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC28.29■■■□□ 2.12
HMGB1P09429 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC28.28■■■□□ 2.12
HMGB1P09429 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
HMGB1P09429 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
HMGB1P09429 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC28.28■■■□□ 2.12
HMGB1P09429 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
HMGB1P09429 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC28.28■■■□□ 2.12
HMGB1P09429 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
HMGB1P09429 AC133552.2-201ENST00000619106 1032 ntBASIC28.28■■■□□ 2.12
HMGB1P09429 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
HMGB1P09429 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
HMGB1P09429 KRT18P10-201ENST00000388836 1287 ntBASIC28.27■■■□□ 2.12
HMGB1P09429 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
HMGB1P09429 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
HMGB1P09429 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
HMGB1P09429 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
HMGB1P09429 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
HMGB1P09429 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.26■■■□□ 2.12
HMGB1P09429 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC28.26■■■□□ 2.11
HMGB1P09429 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.26■■■□□ 2.11
HMGB1P09429 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
HMGB1P09429 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
HMGB1P09429 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
HMGB1P09429 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
HMGB1P09429 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
HMGB1P09429 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
HMGB1P09429 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC28.25■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms