Protein–RNA interactions for Protein: P02538

KRT6A, Keratin, type II cytoskeletal 6A, humanhuman

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT6AP02538 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT6AP02538 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT6AP02538 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
KRT6AP02538 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT6AP02538 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT6AP02538 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.2■■□□□ 1.3
KRT6AP02538 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.2■■□□□ 1.3
KRT6AP02538 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
KRT6AP02538 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT6AP02538 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT6AP02538 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
KRT6AP02538 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT6AP02538 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT6AP02538 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
KRT6AP02538 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.19■■□□□ 1.3
KRT6AP02538 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT6AP02538 AC025884.2-201ENST00000553429 711 ntBASIC23.18■■□□□ 1.3
KRT6AP02538 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
KRT6AP02538 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.18■■□□□ 1.3
KRT6AP02538 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT6AP02538 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT6AP02538 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.17■■□□□ 1.3
KRT6AP02538 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT6AP02538 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT6AP02538 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT6AP02538 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.17■■□□□ 1.3
KRT6AP02538 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT6AP02538 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT6AP02538 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT6AP02538 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
KRT6AP02538 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT6AP02538 MIR3960-201ENST00000583311 91 ntBASIC23.16■■□□□ 1.3
KRT6AP02538 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT6AP02538 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT6AP02538 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
KRT6AP02538 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.15■■□□□ 1.3
KRT6AP02538 AC142381.3-201ENST00000568208 1670 ntBASIC23.15■■□□□ 1.3
KRT6AP02538 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
KRT6AP02538 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
KRT6AP02538 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
KRT6AP02538 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
KRT6AP02538 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
KRT6AP02538 SMPD5-203ENST00000639008 1464 ntBASIC23.14■■□□□ 1.29
KRT6AP02538 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.14■■□□□ 1.29
KRT6AP02538 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
KRT6AP02538 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT6AP02538 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
KRT6AP02538 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
KRT6AP02538 AC092296.2-201ENST00000589470 999 ntBASIC23.13■■□□□ 1.29
KRT6AP02538 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT6AP02538 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
KRT6AP02538 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT6AP02538 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.12■■□□□ 1.29
KRT6AP02538 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT6AP02538 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT6AP02538 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
KRT6AP02538 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
KRT6AP02538 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.11■■□□□ 1.29
KRT6AP02538 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.11■■□□□ 1.29
KRT6AP02538 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.11■■□□□ 1.29
KRT6AP02538 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
KRT6AP02538 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
KRT6AP02538 AC022211.4-201ENST00000625094 2161 ntBASIC23.1■■□□□ 1.29
KRT6AP02538 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT6AP02538 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
KRT6AP02538 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT6AP02538 AC022413.1-201ENST00000624602 984 ntBASIC23.1■■□□□ 1.29
KRT6AP02538 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
KRT6AP02538 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT6AP02538 AC097639.1-201ENST00000565519 1891 ntBASIC23.09■■□□□ 1.29
KRT6AP02538 ECEL1P2-201ENST00000461596 1295 ntBASIC23.09■■□□□ 1.29
KRT6AP02538 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT6AP02538 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
KRT6AP02538 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT6AP02538 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
KRT6AP02538 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT6AP02538 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.08■■□□□ 1.29
KRT6AP02538 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.08■■□□□ 1.29
KRT6AP02538 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
KRT6AP02538 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
KRT6AP02538 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
KRT6AP02538 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
KRT6AP02538 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
KRT6AP02538 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT6AP02538 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.07■■□□□ 1.28
KRT6AP02538 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT6AP02538 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
KRT6AP02538 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.06■■□□□ 1.28
KRT6AP02538 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT6AP02538 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT6AP02538 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.06■■□□□ 1.28
KRT6AP02538 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
KRT6AP02538 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT6AP02538 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT6AP02538 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT6AP02538 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT6AP02538 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.05■■□□□ 1.28
KRT6AP02538 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT6AP02538 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.05■■□□□ 1.28
KRT6AP02538 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms