Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
UPK3AO75631 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.55■■□□□ 1.04
UPK3AO75631 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.55■■□□□ 1.04
UPK3AO75631 MIR3960-201ENST00000583311 91 ntBASIC21.55■■□□□ 1.04
UPK3AO75631 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
UPK3AO75631 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.54■■□□□ 1.04
UPK3AO75631 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK3AO75631 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK3AO75631 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
UPK3AO75631 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPK3AO75631 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPK3AO75631 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
UPK3AO75631 RP9P-202ENST00000450133 1212 ntBASIC21.53■■□□□ 1.04
UPK3AO75631 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPK3AO75631 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPK3AO75631 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
UPK3AO75631 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
UPK3AO75631 ERN1-208ENST00000606895 2068 ntBASIC21.52■■□□□ 1.04
UPK3AO75631 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.52■■□□□ 1.03
UPK3AO75631 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
UPK3AO75631 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
UPK3AO75631 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK3AO75631 AC010501.1-201ENST00000606270 1962 ntBASIC21.51■■□□□ 1.03
UPK3AO75631 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK3AO75631 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UPK3AO75631 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
UPK3AO75631 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK3AO75631 AC093536.1-201ENST00000569153 554 ntBASIC21.5■■□□□ 1.03
UPK3AO75631 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK3AO75631 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
UPK3AO75631 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.49■■□□□ 1.03
UPK3AO75631 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK3AO75631 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
UPK3AO75631 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
UPK3AO75631 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.48■■□□□ 1.03
UPK3AO75631 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.48■■□□□ 1.03
UPK3AO75631 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
UPK3AO75631 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.48■■□□□ 1.03
UPK3AO75631 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
UPK3AO75631 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
UPK3AO75631 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.47■■□□□ 1.03
UPK3AO75631 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
UPK3AO75631 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.47■■□□□ 1.03
UPK3AO75631 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.47■■□□□ 1.03
UPK3AO75631 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK3AO75631 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK3AO75631 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
UPK3AO75631 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UPK3AO75631 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
UPK3AO75631 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.46■■□□□ 1.03
UPK3AO75631 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.46■■□□□ 1.03
UPK3AO75631 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UPK3AO75631 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
UPK3AO75631 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
UPK3AO75631 AC026202.3-201ENST00000600805 1127 ntBASIC21.45■■□□□ 1.02
UPK3AO75631 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UPK3AO75631 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UPK3AO75631 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
UPK3AO75631 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
UPK3AO75631 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UPK3AO75631 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
UPK3AO75631 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UPK3AO75631 AC093323.1-202ENST00000635031 2045 ntBASIC21.44■■□□□ 1.02
UPK3AO75631 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
UPK3AO75631 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
UPK3AO75631 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
UPK3AO75631 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
UPK3AO75631 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.43■■□□□ 1.02
UPK3AO75631 AC009831.1-201ENST00000580420 1582 ntBASIC21.43■■□□□ 1.02
UPK3AO75631 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
UPK3AO75631 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
UPK3AO75631 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
UPK3AO75631 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
UPK3AO75631 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
UPK3AO75631 ABHD17AP5-201ENST00000580133 923 ntBASIC21.42■■□□□ 1.02
UPK3AO75631 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.42■■□□□ 1.02
UPK3AO75631 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
UPK3AO75631 RAP2CP1-202ENST00000605179 643 ntBASIC21.42■■□□□ 1.02
UPK3AO75631 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
UPK3AO75631 AC133552.2-201ENST00000619106 1032 ntBASIC21.42■■□□□ 1.02
UPK3AO75631 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
UPK3AO75631 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
UPK3AO75631 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
UPK3AO75631 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
UPK3AO75631 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
UPK3AO75631 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
UPK3AO75631 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
UPK3AO75631 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.41■■□□□ 1.02
UPK3AO75631 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
UPK3AO75631 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.41■■□□□ 1.02
UPK3AO75631 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
UPK3AO75631 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
UPK3AO75631 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
UPK3AO75631 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.4■■□□□ 1.02
UPK3AO75631 U85056.1-201ENST00000616429 682 ntBASIC21.4■■□□□ 1.02
UPK3AO75631 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
UPK3AO75631 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
UPK3AO75631 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.39■■□□□ 1.02
UPK3AO75631 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
UPK3AO75631 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms