Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 THA1P-201ENST00000590384 1145 ntBASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV17A0A0B4J275 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV17A0A0B4J275 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
TRAV17A0A0B4J275 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV17A0A0B4J275 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV17A0A0B4J275 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV17A0A0B4J275 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.98■■□□□ 1.11
TRAV17A0A0B4J275 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.98■■□□□ 1.11
TRAV17A0A0B4J275 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
TRAV17A0A0B4J275 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.97■■□□□ 1.11
TRAV17A0A0B4J275 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRAV17A0A0B4J275 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV17A0A0B4J275 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV17A0A0B4J275 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV17A0A0B4J275 AL356441.2-201ENST00000443009 864 ntBASIC21.96■■□□□ 1.11
TRAV17A0A0B4J275 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.96■■□□□ 1.11
TRAV17A0A0B4J275 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV17A0A0B4J275 AL592295.1-201ENST00000400984 884 ntBASIC21.95■■□□□ 1.1
TRAV17A0A0B4J275 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
TRAV17A0A0B4J275 KRT125P-201ENST00000546827 989 ntBASIC21.95■■□□□ 1.1
TRAV17A0A0B4J275 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV17A0A0B4J275 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRAV17A0A0B4J275 AP004609.3-201ENST00000610705 1884 ntBASIC21.94■■□□□ 1.1
TRAV17A0A0B4J275 BX664725.1-201ENST00000438252 379 ntBASIC21.94■■□□□ 1.1
TRAV17A0A0B4J275 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.94■■□□□ 1.1
TRAV17A0A0B4J275 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.94■■□□□ 1.1
TRAV17A0A0B4J275 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 KRT18P24-201ENST00000344739 1156 ntBASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.93■■□□□ 1.1
TRAV17A0A0B4J275 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRAV17A0A0B4J275 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV17A0A0B4J275 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV17A0A0B4J275 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV17A0A0B4J275 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.91■■□□□ 1.1
TRAV17A0A0B4J275 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV17A0A0B4J275 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.91■■□□□ 1.1
TRAV17A0A0B4J275 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV17A0A0B4J275 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV17A0A0B4J275 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV17A0A0B4J275 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.9■■□□□ 1.1
TRAV17A0A0B4J275 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
TRAV17A0A0B4J275 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TRAV17A0A0B4J275 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC21.89■■□□□ 1.1
TRAV17A0A0B4J275 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.89■■□□□ 1.09
TRAV17A0A0B4J275 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV17A0A0B4J275 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV17A0A0B4J275 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.89■■□□□ 1.09
TRAV17A0A0B4J275 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TRAV17A0A0B4J275 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.89■■□□□ 1.09
TRAV17A0A0B4J275 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 MIR4787-201ENST00000607364 84 ntBASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
TRAV17A0A0B4J275 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV17A0A0B4J275 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.86■■□□□ 1.09
TRAV17A0A0B4J275 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
TRAV17A0A0B4J275 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV17A0A0B4J275 AC142086.6-201ENST00000621154 1765 ntBASIC21.86■■□□□ 1.09
TRAV17A0A0B4J275 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV17A0A0B4J275 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV17A0A0B4J275 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV17A0A0B4J275 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV17A0A0B4J275 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms