Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A3BPQ9Y5P4 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.98■□□□□ 0.63
COL4A3BPQ9Y5P4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A3BPQ9Y5P4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
COL4A3BPQ9Y5P4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A3BPQ9Y5P4 AC099398.1-201ENST00000567919 2776 ntBASIC18.98■□□□□ 0.63
COL4A3BPQ9Y5P4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A3BPQ9Y5P4 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 OR7E47P-204ENST00000575924 449 ntBASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 AC006538.3-201ENST00000612495 578 ntBASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 AC106886.4-201ENST00000623557 2502 ntBASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A3BPQ9Y5P4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 IGLL3P-201ENST00000412472 434 ntBASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 AC023274.1-201ENST00000418278 595 ntBASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 GPALPP1-207ENST00000611650 899 ntBASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A3BPQ9Y5P4 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 PAWRP1-201ENST00000451083 565 ntBASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 AC002347.1-201ENST00000569543 541 ntBASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A3BPQ9Y5P4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.94■□□□□ 0.62
COL4A3BPQ9Y5P4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms