Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX4Q9UIU6 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX4Q9UIU6 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX4Q9UIU6 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX4Q9UIU6 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX4Q9UIU6 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 RNU1-129P-201ENST00000384064 167 ntBASIC18.06■□□□□ 0.48
SIX4Q9UIU6 DNAJB3-201ENST00000446806 729 ntBASIC18.06■□□□□ 0.48
SIX4Q9UIU6 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.06■□□□□ 0.48
SIX4Q9UIU6 U1.21-201ENST00000580816 167 ntBASIC18.06■□□□□ 0.48
SIX4Q9UIU6 AC092902.6-201ENST00000641783 218 ntBASIC18.06■□□□□ 0.48
SIX4Q9UIU6 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX4Q9UIU6 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 AC106886.4-201ENST00000623557 2502 ntBASIC18.05■□□□□ 0.48
SIX4Q9UIU6 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 AC055717.3-201ENST00000622967 595 ntBASIC18.05■□□□□ 0.48
SIX4Q9UIU6 AL603756.1-201ENST00000606511 2163 ntBASIC18.05■□□□□ 0.48
SIX4Q9UIU6 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX4Q9UIU6 LTB4R2-202ENST00000528054 3092 ntBASIC18.04■□□□□ 0.48
SIX4Q9UIU6 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX4Q9UIU6 HTR5BP-201ENST00000430851 1154 ntBASIC18.04■□□□□ 0.48
SIX4Q9UIU6 FAM58CP-201ENST00000435741 640 ntBASIC18.04■□□□□ 0.48
SIX4Q9UIU6 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms