Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 AC246785.2-201ENST00000432512 513 ntBASIC16.85■□□□□ 0.29
SSU72Q9NP77 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 AC011467.2-201ENST00000598425 242 ntBASIC16.85■□□□□ 0.29
SSU72Q9NP77 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSU72Q9NP77 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.85■□□□□ 0.29
SSU72Q9NP77 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.85■□□□□ 0.29
SSU72Q9NP77 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.84■□□□□ 0.29
SSU72Q9NP77 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.84■□□□□ 0.29
SSU72Q9NP77 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.84■□□□□ 0.29
SSU72Q9NP77 AC011840.4-201ENST00000578471 627 ntBASIC16.84■□□□□ 0.29
SSU72Q9NP77 AC124864.1-201ENST00000623408 392 ntBASIC16.84■□□□□ 0.29
SSU72Q9NP77 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.84■□□□□ 0.29
SSU72Q9NP77 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SSU72Q9NP77 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SSU72Q9NP77 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSU72Q9NP77 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SSU72Q9NP77 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
SSU72Q9NP77 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SSU72Q9NP77 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SSU72Q9NP77 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SSU72Q9NP77 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
SSU72Q9NP77 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SSU72Q9NP77 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SSU72Q9NP77 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 SPDYE13P-201ENST00000445314 798 ntBASIC16.83■□□□□ 0.28
SSU72Q9NP77 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 AC090616.6-201ENST00000582640 721 ntBASIC16.83■□□□□ 0.28
SSU72Q9NP77 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.83■□□□□ 0.28
SSU72Q9NP77 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
SSU72Q9NP77 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSU72Q9NP77 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 AC006449.6-201ENST00000612330 2296 ntBASIC16.82■□□□□ 0.28
SSU72Q9NP77 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 AC022532.1-201ENST00000624563 1728 ntBASIC16.82■□□□□ 0.28
SSU72Q9NP77 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms