Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 UBALD1-205ENST00000590891 2641 ntBASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC40Q9H9A6 AL603756.1-201ENST00000606511 2163 ntBASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 PCDHB19P-201ENST00000570871 2371 ntBASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 AL645728.1-201ENST00000366221 2101 ntBASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC40Q9H9A6 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 LAGE3P1-201ENST00000425356 484 ntBASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 AC021087.4-201ENST00000563761 564 ntBASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC40Q9H9A6 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms