Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 AC010203.1-204ENST00000548782 407 ntBASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 AC073912.3-201ENST00000624414 853 ntBASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 PKD1P5-201ENST00000532415 10291 ntBASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 ME2P1-201ENST00000426028 1970 ntBASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 BX664615.1-201ENST00000443558 458 ntBASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 RN7SL606P-201ENST00000472779 293 ntBASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 YBX1P2-201ENST00000489612 999 ntBASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 VENTXP5-201ENST00000523979 775 ntBASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28BQ9BUN5 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 AC139887.4-201ENST00000607877 719 ntBASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms