Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 KRT8P49-201ENST00000604166 1432 ntBASIC17.58■□□□□ 0.41
HERPUD2Q9BSE4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HERPUD2Q9BSE4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 AL022326.1-202ENST00000641533 845 ntBASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 HCG11-201ENST00000411553 5696 ntBASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HERPUD2Q9BSE4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 FGFR3P6-201ENST00000457012 610 ntBASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 UNC93B7-201ENST00000509439 705 ntBASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 MTDHP3-201ENST00000594186 672 ntBASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HERPUD2Q9BSE4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 AL356309.3-201ENST00000624132 1934 ntBASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 AC006277.1-201ENST00000624348 1610 ntBASIC17.55■□□□□ 0.4
HERPUD2Q9BSE4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms