Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 NUS1P1-201ENST00000446295 882 ntBASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 KRT18P56-201ENST00000507275 550 ntBASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 AC004817.3-201ENST00000602957 2129 ntBASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 AC046158.3-201ENST00000624947 2558 ntBASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 AC124947.2-201ENST00000547118 1133 ntBASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 AC114341.1-201ENST00000618070 349 ntBASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM56Q9BRZ2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM56Q9BRZ2 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms