Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS33AQ96AX1 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 AC068418.2-201ENST00000577309 3703 ntBASIC16.35■□□□□ 0.21
VPS33AQ96AX1 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 AL391256.1-201ENST00000443260 1855 ntBASIC16.35■□□□□ 0.21
VPS33AQ96AX1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 AC211429.1-201ENST00000415277 523 ntBASIC16.35■□□□□ 0.21
VPS33AQ96AX1 AL671277.2-201ENST00000458060 996 ntBASIC16.35■□□□□ 0.21
VPS33AQ96AX1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 AC063952.2-201ENST00000498792 1227 ntBASIC16.35■□□□□ 0.21
VPS33AQ96AX1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 ALOX12P2-203ENST00000570921 1945 ntBASIC16.35■□□□□ 0.21
VPS33AQ96AX1 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS33AQ96AX1 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 AC091607.1-201ENST00000490318 1060 ntBASIC16.34■□□□□ 0.21
VPS33AQ96AX1 AC090616.6-201ENST00000582640 721 ntBASIC16.34■□□□□ 0.21
VPS33AQ96AX1 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS33AQ96AX1 AC011498.5-201ENST00000592027 486 ntBASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms