Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HPS3Q969F9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HPS3Q969F9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HPS3Q969F9 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HPS3Q969F9 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.8■□□□□ 0.6
HPS3Q969F9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HPS3Q969F9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HPS3Q969F9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
HPS3Q969F9 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.79■□□□□ 0.6
HPS3Q969F9 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.79■□□□□ 0.6
HPS3Q969F9 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.79■□□□□ 0.6
HPS3Q969F9 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.79■□□□□ 0.6
HPS3Q969F9 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.79■□□□□ 0.6
HPS3Q969F9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.79■□□□□ 0.6
HPS3Q969F9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.79■□□□□ 0.6
HPS3Q969F9 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HPS3Q969F9 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 AL391256.1-201ENST00000443260 1855 ntBASIC18.79■□□□□ 0.6
HPS3Q969F9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.79■□□□□ 0.6
HPS3Q969F9 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HPS3Q969F9 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.79■□□□□ 0.6
HPS3Q969F9 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.79■□□□□ 0.6
HPS3Q969F9 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HPS3Q969F9 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
HPS3Q969F9 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.78■□□□□ 0.6
HPS3Q969F9 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.78■□□□□ 0.6
HPS3Q969F9 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 FAAHP1-202ENST00000446499 1238 ntBASIC18.78■□□□□ 0.6
HPS3Q969F9 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.78■□□□□ 0.6
HPS3Q969F9 AC136632.2-201ENST00000512891 861 ntBASIC18.78■□□□□ 0.6
HPS3Q969F9 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.78■□□□□ 0.6
HPS3Q969F9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 AC105339.3-201ENST00000560043 636 ntBASIC18.78■□□□□ 0.6
HPS3Q969F9 AL356488.2-201ENST00000602755 427 ntBASIC18.78■□□□□ 0.6
HPS3Q969F9 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HPS3Q969F9 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.78■□□□□ 0.6
HPS3Q969F9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HPS3Q969F9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HPS3Q969F9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.78■□□□□ 0.6
HPS3Q969F9 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HPS3Q969F9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.77■□□□□ 0.6
HPS3Q969F9 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.77■□□□□ 0.6
HPS3Q969F9 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HPS3Q969F9 TUBB8P12-201ENST00000308911 1335 ntBASIC18.77■□□□□ 0.6
HPS3Q969F9 TUBB7P-202ENST00000428444 1305 ntBASIC18.77■□□□□ 0.6
HPS3Q969F9 TUBB8P7-204ENST00000567960 1332 ntBASIC18.77■□□□□ 0.6
HPS3Q969F9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 KRT8P49-201ENST00000604166 1432 ntBASIC18.77■□□□□ 0.6
HPS3Q969F9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HPS3Q969F9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
HPS3Q969F9 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.77■□□□□ 0.6
HPS3Q969F9 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.77■□□□□ 0.6
HPS3Q969F9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.77■□□□□ 0.6
HPS3Q969F9 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 SLC25A6P4-201ENST00000586535 553 ntBASIC18.77■□□□□ 0.6
HPS3Q969F9 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.77■□□□□ 0.6
HPS3Q969F9 REXO1L3P-201ENST00000622202 1288 ntBASIC18.77■□□□□ 0.6
HPS3Q969F9 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.77■□□□□ 0.6
HPS3Q969F9 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.77■□□□□ 0.6
HPS3Q969F9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
HPS3Q969F9 HLA-A-202ENST00000376806 1854 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms