Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTF1Q92541 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC22.07■■□□□ 1.12
RTF1Q92541 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTF1Q92541 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC22.07■■□□□ 1.12
RTF1Q92541 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
RTF1Q92541 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTF1Q92541 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC22.07■■□□□ 1.12
RTF1Q92541 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTF1Q92541 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
RTF1Q92541 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC22.06■■□□□ 1.12
RTF1Q92541 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
RTF1Q92541 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC22.06■■□□□ 1.12
RTF1Q92541 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 TIMM8BP1-201ENST00000452384 211 ntBASIC22.06■■□□□ 1.12
RTF1Q92541 MTRF1LP2-201ENST00000506027 1122 ntBASIC22.06■■□□□ 1.12
RTF1Q92541 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
RTF1Q92541 AC022145.2-201ENST00000598203 171 ntBASIC22.06■■□□□ 1.12
RTF1Q92541 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC22.06■■□□□ 1.12
RTF1Q92541 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC22.06■■□□□ 1.12
RTF1Q92541 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 AL023806.1-201ENST00000603994 1649 ntBASIC22.06■■□□□ 1.12
RTF1Q92541 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTF1Q92541 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
RTF1Q92541 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC22.05■■□□□ 1.12
RTF1Q92541 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC22.05■■□□□ 1.12
RTF1Q92541 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC22.05■■□□□ 1.12
RTF1Q92541 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC22.05■■□□□ 1.12
RTF1Q92541 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC22.05■■□□□ 1.12
RTF1Q92541 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC22.05■■□□□ 1.12
RTF1Q92541 AC027612.4-201ENST00000605371 583 ntBASIC22.05■■□□□ 1.12
RTF1Q92541 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.05■■□□□ 1.12
RTF1Q92541 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC22.05■■□□□ 1.12
RTF1Q92541 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC22.05■■□□□ 1.12
RTF1Q92541 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
RTF1Q92541 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC22.05■■□□□ 1.12
RTF1Q92541 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RTF1Q92541 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC22.04■■□□□ 1.12
RTF1Q92541 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC22.04■■□□□ 1.12
RTF1Q92541 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 SPDYE11-202ENST00000450699 704 ntBASIC22.04■■□□□ 1.12
RTF1Q92541 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC22.04■■□□□ 1.12
RTF1Q92541 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 SPDYE9P-201ENST00000570642 692 ntBASIC22.04■■□□□ 1.12
RTF1Q92541 SPDYE10P-202ENST00000612005 668 ntBASIC22.04■■□□□ 1.12
RTF1Q92541 SPDYE8P-202ENST00000612377 668 ntBASIC22.04■■□□□ 1.12
RTF1Q92541 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC22.04■■□□□ 1.12
RTF1Q92541 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
RTF1Q92541 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
RTF1Q92541 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
RTF1Q92541 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RTF1Q92541 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC22.04■■□□□ 1.12
RTF1Q92541 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC22.03■■□□□ 1.12
RTF1Q92541 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC22.03■■□□□ 1.12
RTF1Q92541 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RTF1Q92541 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
RTF1Q92541 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms