Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 TSEN15P1-201ENST00000423257 515 ntBASIC26.28■■□□□ 1.8
VPS8Q8N3P4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 RNF216P1-203ENST00000404404 2427 ntBASIC26.28■■□□□ 1.8
VPS8Q8N3P4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC26.28■■□□□ 1.8
VPS8Q8N3P4 HLA-A-202ENST00000376806 1854 ntBASIC26.27■■□□□ 1.8
VPS8Q8N3P4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 AC142381.1-201ENST00000426099 345 ntBASIC26.27■■□□□ 1.8
VPS8Q8N3P4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 AL031731.1-201ENST00000642131 2094 ntBASIC26.27■■□□□ 1.8
VPS8Q8N3P4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS8Q8N3P4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.8
VPS8Q8N3P4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 PMS2P2-201ENST00000425039 1128 ntBASIC26.26■■□□□ 1.79
VPS8Q8N3P4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 AC073389.1-201ENST00000595595 795 ntBASIC26.26■■□□□ 1.79
VPS8Q8N3P4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC26.26■■□□□ 1.79
VPS8Q8N3P4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
VPS8Q8N3P4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 FAM58DP-201ENST00000428076 619 ntBASIC26.24■■□□□ 1.79
VPS8Q8N3P4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 AC022211.2-201ENST00000585075 2527 ntBASIC26.24■■□□□ 1.79
VPS8Q8N3P4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS8Q8N3P4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms