Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AC006504.5-208ENST00000588784 2401 ntBASIC10.56□□□□□ -0.72
LINC00643Q86TS7 CICP8-201ENST00000455800 2813 ntBASIC10.56□□□□□ -0.72
LINC00643Q86TS7 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 PID1-202ENST00000392054 2745 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SRD5A1P1-201ENST00000442297 786 ntBASIC10.55□□□□□ -0.72
LINC00643Q86TS7 IGHV3-19-201ENST00000521488 291 ntBASIC10.55□□□□□ -0.72
LINC00643Q86TS7 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 KRT18P20-201ENST00000548986 1279 ntBASIC10.55□□□□□ -0.72
LINC00643Q86TS7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 POR-201ENST00000394893 2532 ntTSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 TMBIM7P-203ENST00000641617 1718 ntBASIC10.55□□□□□ -0.72
LINC00643Q86TS7 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC10.55□□□□□ -0.72
LINC00643Q86TS7 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms