Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 UNC93B6-202ENST00000528242 690 ntBASIC20.5■□□□□ 0.87
VPS53Q5VIR6 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS53Q5VIR6 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 AP000347.1-202ENST00000435868 847 ntBASIC20.49■□□□□ 0.87
VPS53Q5VIR6 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 AC093909.1-201ENST00000504731 1122 ntBASIC20.49■□□□□ 0.87
VPS53Q5VIR6 DUX4L17-201ENST00000557360 1267 ntBASIC20.49■□□□□ 0.87
VPS53Q5VIR6 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 MIR1199-201ENST00000621445 119 ntBASIC20.49■□□□□ 0.87
VPS53Q5VIR6 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 PI4KAP1-204ENST00000612579 1703 ntBASIC20.49■□□□□ 0.87
VPS53Q5VIR6 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS53Q5VIR6 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 AC009947.1-201ENST00000444350 727 ntBASIC20.48■□□□□ 0.87
VPS53Q5VIR6 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 IGHV3-65-201ENST00000523210 341 ntBASIC20.48■□□□□ 0.87
VPS53Q5VIR6 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 OR7E47P-204ENST00000575924 449 ntBASIC20.48■□□□□ 0.87
VPS53Q5VIR6 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 AC008667.4-201ENST00000607370 168 ntBASIC20.48■□□□□ 0.87
VPS53Q5VIR6 AC120114.3-201ENST00000611923 658 ntBASIC20.48■□□□□ 0.87
VPS53Q5VIR6 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS53Q5VIR6 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 AC108073.2-201ENST00000464002 357 ntBASIC20.47■□□□□ 0.87
VPS53Q5VIR6 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 BX640515.1-201ENST00000617215 977 ntBASIC20.47■□□□□ 0.87
VPS53Q5VIR6 AC005593.1-201ENST00000624894 515 ntBASIC20.47■□□□□ 0.87
VPS53Q5VIR6 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms