Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 PCDHB19P-201ENST00000570871 2371 ntBASIC19.65■□□□□ 0.74
SF3A1Q15459 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
SF3A1Q15459 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.65■□□□□ 0.74
SF3A1Q15459 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.65■□□□□ 0.74
SF3A1Q15459 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SF3A1Q15459 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SF3A1Q15459 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SF3A1Q15459 FLJ16779-201ENST00000612722 7638 ntBASIC19.64■□□□□ 0.73
SF3A1Q15459 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SF3A1Q15459 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SF3A1Q15459 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.64■□□□□ 0.73
SF3A1Q15459 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.64■□□□□ 0.73
SF3A1Q15459 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.64■□□□□ 0.73
SF3A1Q15459 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.64■□□□□ 0.73
SF3A1Q15459 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.64■□□□□ 0.73
SF3A1Q15459 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SF3A1Q15459 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.64■□□□□ 0.73
SF3A1Q15459 SIGLEC16-201ENST00000599858 1437 ntBASIC19.64■□□□□ 0.73
SF3A1Q15459 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SF3A1Q15459 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SF3A1Q15459 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.64■□□□□ 0.73
SF3A1Q15459 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SF3A1Q15459 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SF3A1Q15459 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SF3A1Q15459 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SF3A1Q15459 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SF3A1Q15459 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SF3A1Q15459 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SF3A1Q15459 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
SF3A1Q15459 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.63■□□□□ 0.73
SF3A1Q15459 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SF3A1Q15459 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
SF3A1Q15459 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SF3A1Q15459 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.63■□□□□ 0.73
SF3A1Q15459 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.63■□□□□ 0.73
SF3A1Q15459 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.63■□□□□ 0.73
SF3A1Q15459 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.63■□□□□ 0.73
SF3A1Q15459 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SF3A1Q15459 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.63■□□□□ 0.73
SF3A1Q15459 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SF3A1Q15459 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
SF3A1Q15459 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
SF3A1Q15459 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 AC079776.2-201ENST00000641154 1609 ntBASIC19.62■□□□□ 0.73
SF3A1Q15459 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
SF3A1Q15459 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.62■□□□□ 0.73
SF3A1Q15459 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SF3A1Q15459 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SF3A1Q15459 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 ACTG1P4-201ENST00000425123 1122 ntBASIC19.62■□□□□ 0.73
SF3A1Q15459 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.62■□□□□ 0.73
SF3A1Q15459 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SF3A1Q15459 AC132008.2-207ENST00000454517 770 ntBASIC19.62■□□□□ 0.73
SF3A1Q15459 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SF3A1Q15459 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.62■□□□□ 0.73
SF3A1Q15459 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.62■□□□□ 0.73
SF3A1Q15459 AP001269.4-201ENST00000609611 512 ntBASIC19.62■□□□□ 0.73
SF3A1Q15459 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 AC073592.4-201ENST00000623827 446 ntBASIC19.62■□□□□ 0.73
SF3A1Q15459 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 AC097637.2-201ENST00000624096 1997 ntBASIC19.62■□□□□ 0.73
SF3A1Q15459 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
SF3A1Q15459 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms