Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC10.32□□□□□ -0.76
HSPG2P98160 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 HLA-H-201ENST00000383620 1096 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC10.32□□□□□ -0.76
HSPG2P98160 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC10.32□□□□□ -0.76
HSPG2P98160 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 MIR326-201ENST00000362220 95 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 HINT2P1-201ENST00000419438 481 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC10.32□□□□□ -0.76
HSPG2P98160 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC10.32□□□□□ -0.76
HSPG2P98160 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 AL391069.4-201ENST00000609583 481 ntBASIC10.32□□□□□ -0.76
HSPG2P98160 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC10.32□□□□□ -0.76
HSPG2P98160 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC10.32□□□□□ -0.76
HSPG2P98160 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC10.32□□□□□ -0.76
HSPG2P98160 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
HSPG2P98160 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC10.31□□□□□ -0.76
HSPG2P98160 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC10.31□□□□□ -0.76
HSPG2P98160 MPV17-204ENST00000399052 749 ntTSL 4 BASIC10.31□□□□□ -0.76
HSPG2P98160 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC10.31□□□□□ -0.76
HSPG2P98160 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 GOLGA2P9-201ENST00000596977 1937 ntBASIC10.31□□□□□ -0.76
HSPG2P98160 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 KRT18P34-201ENST00000488218 1270 ntBASIC10.31□□□□□ -0.76
HSPG2P98160 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
HSPG2P98160 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
HSPG2P98160 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 BOLA2P3-201ENST00000404566 256 ntBASIC10.31□□□□□ -0.76
HSPG2P98160 KRT43P-201ENST00000434019 910 ntBASIC10.31□□□□□ -0.76
HSPG2P98160 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC10.31□□□□□ -0.76
HSPG2P98160 REEP1-202ENST00000453231 940 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 FTH1P14-201ENST00000482930 551 ntBASIC10.31□□□□□ -0.76
HSPG2P98160 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC10.31□□□□□ -0.76
HSPG2P98160 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 RN7SL560P-201ENST00000577943 264 ntBASIC10.31□□□□□ -0.76
HSPG2P98160 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
HSPG2P98160 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
HSPG2P98160 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
HSPG2P98160 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
HSPG2P98160 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
HSPG2P98160 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC10.3□□□□□ -0.76
HSPG2P98160 AL162726.2-201ENST00000438986 1017 ntBASIC10.3□□□□□ -0.76
HSPG2P98160 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
HSPG2P98160 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
HSPG2P98160 AMT-232ENST00000636199 1546 ntTSL 5 BASIC10.3□□□□□ -0.76
HSPG2P98160 LINC00304-203ENST00000565008 1864 ntBASIC10.3□□□□□ -0.76
HSPG2P98160 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC10.3□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms