Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.56■□□□□ 0.24
YBX1P67809 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.56■□□□□ 0.24
YBX1P67809 EGFEM1P-202ENST00000431685 1563 ntBASIC16.56■□□□□ 0.24
YBX1P67809 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
YBX1P67809 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.56■□□□□ 0.24
YBX1P67809 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.56■□□□□ 0.24
YBX1P67809 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.56■□□□□ 0.24
YBX1P67809 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
YBX1P67809 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
YBX1P67809 AC098831.1-202ENST00000438821 336 ntBASIC16.56■□□□□ 0.24
YBX1P67809 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.56■□□□□ 0.24
YBX1P67809 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.56■□□□□ 0.24
YBX1P67809 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.56■□□□□ 0.24
YBX1P67809 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.56■□□□□ 0.24
YBX1P67809 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.56■□□□□ 0.24
YBX1P67809 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
YBX1P67809 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.56■□□□□ 0.24
YBX1P67809 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
YBX1P67809 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 AL356488.2-201ENST00000602755 427 ntBASIC16.56■□□□□ 0.24
YBX1P67809 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
YBX1P67809 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
YBX1P67809 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
YBX1P67809 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
YBX1P67809 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.55■□□□□ 0.24
YBX1P67809 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.55■□□□□ 0.24
YBX1P67809 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
YBX1P67809 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.55■□□□□ 0.24
YBX1P67809 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.55■□□□□ 0.24
YBX1P67809 SLC25A1P1-201ENST00000528351 927 ntBASIC16.55■□□□□ 0.24
YBX1P67809 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.55■□□□□ 0.24
YBX1P67809 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.55■□□□□ 0.24
YBX1P67809 AC006557.2-201ENST00000592985 1240 ntBASIC16.55■□□□□ 0.24
YBX1P67809 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.55■□□□□ 0.24
YBX1P67809 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.55■□□□□ 0.24
YBX1P67809 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
YBX1P67809 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.55■□□□□ 0.24
YBX1P67809 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
YBX1P67809 AL162727.3-201ENST00000635661 2787 ntBASIC16.55■□□□□ 0.24
YBX1P67809 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
YBX1P67809 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
YBX1P67809 IL9RP2-201ENST00000423948 1312 ntBASIC16.54■□□□□ 0.24
YBX1P67809 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
YBX1P67809 AC132872.4-202ENST00000622924 2756 ntBASIC16.54■□□□□ 0.24
YBX1P67809 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
YBX1P67809 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
YBX1P67809 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.54■□□□□ 0.24
YBX1P67809 IGHV3-22-201ENST00000520721 359 ntBASIC16.54■□□□□ 0.24
YBX1P67809 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.54■□□□□ 0.24
YBX1P67809 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.54■□□□□ 0.24
YBX1P67809 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.54■□□□□ 0.24
YBX1P67809 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.54■□□□□ 0.24
YBX1P67809 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.54■□□□□ 0.24
YBX1P67809 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.54■□□□□ 0.24
YBX1P67809 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
YBX1P67809 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.54■□□□□ 0.24
YBX1P67809 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
YBX1P67809 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.54■□□□□ 0.24
YBX1P67809 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms