Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.74■□□□□ 0.43
HDAC4P56524 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HDAC4P56524 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 RPS2P28-201ENST00000314255 741 ntBASIC17.74■□□□□ 0.43
HDAC4P56524 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 AC087163.2-201ENST00000457299 853 ntBASIC17.74■□□□□ 0.43
HDAC4P56524 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
HDAC4P56524 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.74■□□□□ 0.43
HDAC4P56524 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.74■□□□□ 0.43
HDAC4P56524 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.74■□□□□ 0.43
HDAC4P56524 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.74■□□□□ 0.43
HDAC4P56524 AF228730.7-201ENST00000641842 219 ntBASIC17.74■□□□□ 0.43
HDAC4P56524 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.74■□□□□ 0.43
HDAC4P56524 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
HDAC4P56524 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.74■□□□□ 0.43
HDAC4P56524 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDAC4P56524 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.74■□□□□ 0.43
HDAC4P56524 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
HDAC4P56524 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.73■□□□□ 0.43
HDAC4P56524 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
HDAC4P56524 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.73■□□□□ 0.43
HDAC4P56524 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HDAC4P56524 AC008667.4-201ENST00000607370 168 ntBASIC17.73■□□□□ 0.43
HDAC4P56524 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
HDAC4P56524 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HDAC4P56524 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.73■□□□□ 0.43
HDAC4P56524 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 AC078925.2-201ENST00000624013 1973 ntBASIC17.73■□□□□ 0.43
HDAC4P56524 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HDAC4P56524 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HDAC4P56524 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDAC4P56524 HLA-A-201ENST00000376802 1334 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.72■□□□□ 0.43
HDAC4P56524 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HDAC4P56524 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 AC002310.6-201ENST00000624451 1377 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDAC4P56524 SLC25A6P2-201ENST00000497974 877 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 IGHV3-65-201ENST00000523210 341 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.72■□□□□ 0.43
HDAC4P56524 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.72■□□□□ 0.43
HDAC4P56524 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HDAC4P56524 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.72■□□□□ 0.43
HDAC4P56524 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.72■□□□□ 0.43
HDAC4P56524 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.72■□□□□ 0.43
HDAC4P56524 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.72■□□□□ 0.43
HDAC4P56524 MIR1199-201ENST00000621445 119 ntBASIC17.72■□□□□ 0.43
HDAC4P56524 AC117500.6-201ENST00000624871 588 ntBASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms