Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PKNOX1P55347 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PKNOX1P55347 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.7■□□□□ 0.26
PKNOX1P55347 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 INTS4P1-201ENST00000438455 1935 ntBASIC16.7■□□□□ 0.26
PKNOX1P55347 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.7■□□□□ 0.26
PKNOX1P55347 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.7■□□□□ 0.26
PKNOX1P55347 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.7■□□□□ 0.26
PKNOX1P55347 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PKNOX1P55347 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 MINOS1P3-201ENST00000457048 203 ntBASIC16.7■□□□□ 0.26
PKNOX1P55347 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.7■□□□□ 0.26
PKNOX1P55347 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.7■□□□□ 0.26
PKNOX1P55347 AL049597.2-201ENST00000565575 961 ntBASIC16.7■□□□□ 0.26
PKNOX1P55347 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
PKNOX1P55347 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PKNOX1P55347 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PKNOX1P55347 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.7■□□□□ 0.26
PKNOX1P55347 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 KRT17P6-201ENST00000453795 1220 ntBASIC16.69■□□□□ 0.26
PKNOX1P55347 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.69■□□□□ 0.26
PKNOX1P55347 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 TPSP2-201ENST00000561760 610 ntBASIC16.69■□□□□ 0.26
PKNOX1P55347 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.69■□□□□ 0.26
PKNOX1P55347 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.69■□□□□ 0.26
PKNOX1P55347 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PKNOX1P55347 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PKNOX1P55347 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 PMPCAP1-201ENST00000508114 1576 ntBASIC16.68■□□□□ 0.26
PKNOX1P55347 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 AC007950.2-201ENST00000615045 2347 ntBASIC16.68■□□□□ 0.26
PKNOX1P55347 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.68■□□□□ 0.26
PKNOX1P55347 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms