Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 AL080243.2-201ENST00000418783 582 ntBASIC17.92■□□□□ 0.46
COL4A4P53420 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.92■□□□□ 0.46
COL4A4P53420 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 AC018470.1-201ENST00000624790 3129 ntBASIC17.91■□□□□ 0.46
COL4A4P53420 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL4A4P53420 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL4A4P53420 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
COL4A4P53420 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A4P53420 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.91■□□□□ 0.46
COL4A4P53420 RPS2P32-201ENST00000439199 892 ntBASIC17.91■□□□□ 0.46
COL4A4P53420 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A4P53420 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 RARRES2P9-201ENST00000565168 469 ntBASIC17.91■□□□□ 0.46
COL4A4P53420 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.91■□□□□ 0.46
COL4A4P53420 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A4P53420 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL4A4P53420 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.91■□□□□ 0.46
COL4A4P53420 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.91■□□□□ 0.46
COL4A4P53420 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL4A4P53420 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A4P53420 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL4A4P53420 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.91■□□□□ 0.46
COL4A4P53420 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
COL4A4P53420 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 AC245100.3-201ENST00000441281 285 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
COL4A4P53420 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A4P53420 AC119751.2-201ENST00000504529 210 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
COL4A4P53420 TP53TG3HP-202ENST00000569755 579 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL4A4P53420 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL4A4P53420 LINC02012-201ENST00000608206 1725 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 FRMD8P1-201ENST00000440433 1524 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.9■□□□□ 0.46
COL4A4P53420 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 AC108860.2-201ENST00000562760 2183 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A4P53420 AP006294.1-201ENST00000415407 339 ntBASIC17.9■□□□□ 0.46
COL4A4P53420 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A4P53420 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.9■□□□□ 0.46
COL4A4P53420 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A4P53420 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.9■□□□□ 0.46
COL4A4P53420 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.9■□□□□ 0.46
COL4A4P53420 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL4A4P53420 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
COL4A4P53420 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.89■□□□□ 0.45
COL4A4P53420 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms