Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
PTPN9P43378 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 AL603756.1-201ENST00000606511 2163 ntBASIC17.62■□□□□ 0.41
PTPN9P43378 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
PTPN9P43378 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN9P43378 SLC22A20-204ENST00000530038 1673 ntBASIC17.61■□□□□ 0.41
PTPN9P43378 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN9P43378 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.61■□□□□ 0.41
PTPN9P43378 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 PMS2P1-201ENST00000431037 1228 ntBASIC17.61■□□□□ 0.41
PTPN9P43378 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.61■□□□□ 0.41
PTPN9P43378 AC145285.3-201ENST00000564603 959 ntBASIC17.61■□□□□ 0.41
PTPN9P43378 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN9P43378 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.61■□□□□ 0.41
PTPN9P43378 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.61■□□□□ 0.41
PTPN9P43378 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN9P43378 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 AC131009.4-201ENST00000624048 1740 ntBASIC17.61■□□□□ 0.41
PTPN9P43378 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN9P43378 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTPN9P43378 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
PTPN9P43378 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN9P43378 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 FAM185BP-201ENST00000443595 716 ntBASIC17.6■□□□□ 0.41
PTPN9P43378 HLA-J-202ENST00000469281 1241 ntBASIC17.6■□□□□ 0.41
PTPN9P43378 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.6■□□□□ 0.41
PTPN9P43378 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 MIR4751-201ENST00000578027 74 ntBASIC17.6■□□□□ 0.41
PTPN9P43378 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 Z83851.2-201ENST00000609564 659 ntBASIC17.6■□□□□ 0.41
PTPN9P43378 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
PTPN9P43378 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.6■□□□□ 0.41
PTPN9P43378 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.6■□□□□ 0.41
PTPN9P43378 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTPN9P43378 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.59■□□□□ 0.41
PTPN9P43378 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PTPN9P43378 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.59■□□□□ 0.41
PTPN9P43378 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 HCG4-201ENST00000418983 998 ntBASIC17.59■□□□□ 0.41
PTPN9P43378 AC026396.1-201ENST00000419388 421 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms