Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.55■□□□□ 0.08
RFC3P40938 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.55■□□□□ 0.08
RFC3P40938 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 AC092919.2-201ENST00000623631 1645 ntBASIC15.55■□□□□ 0.08
RFC3P40938 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.55■□□□□ 0.08
RFC3P40938 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RFC3P40938 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.55■□□□□ 0.08
RFC3P40938 AC074386.1-202ENST00000463561 864 ntBASIC15.55■□□□□ 0.08
RFC3P40938 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.55■□□□□ 0.08
RFC3P40938 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RFC3P40938 SNHG9-202ENST00000564014 471 ntBASIC15.55■□□□□ 0.08
RFC3P40938 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.55■□□□□ 0.08
RFC3P40938 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.55■□□□□ 0.08
RFC3P40938 AC007064.4-201ENST00000637740 555 ntBASIC15.55■□□□□ 0.08
RFC3P40938 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RFC3P40938 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.55■□□□□ 0.08
RFC3P40938 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFC3P40938 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.54■□□□□ 0.08
RFC3P40938 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.54■□□□□ 0.08
RFC3P40938 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.54■□□□□ 0.08
RFC3P40938 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.54■□□□□ 0.08
RFC3P40938 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.54■□□□□ 0.08
RFC3P40938 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.54■□□□□ 0.08
RFC3P40938 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.54■□□□□ 0.08
RFC3P40938 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.54■□□□□ 0.08
RFC3P40938 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.54■□□□□ 0.08
RFC3P40938 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 ACTL9-202ENST00000612068 1252 ntBASIC15.54■□□□□ 0.08
RFC3P40938 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.54■□□□□ 0.08
RFC3P40938 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
RFC3P40938 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFC3P40938 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.53■□□□□ 0.08
RFC3P40938 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
RFC3P40938 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.53■□□□□ 0.08
RFC3P40938 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
RFC3P40938 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 AC018695.7-201ENST00000624587 2492 ntBASIC15.53■□□□□ 0.08
RFC3P40938 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.53■□□□□ 0.08
RFC3P40938 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.53■□□□□ 0.08
RFC3P40938 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFC3P40938 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
RFC3P40938 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.53■□□□□ 0.08
RFC3P40938 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.53■□□□□ 0.08
RFC3P40938 FAM185BP-201ENST00000443595 716 ntBASIC15.53■□□□□ 0.08
RFC3P40938 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RFC3P40938 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms